National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore 560065, India.
Biochemistry. 2013 Aug 27;52(34):5770-9. doi: 10.1021/bi400688w. Epub 2013 Aug 16.
Direct evidence of the presence of competing pathways for the folding or unfolding reactions of proteins is difficult to obtain. A direct signature for multiple pathways, seen so far only rarely in folding or unfolding studies, is an upward curvature in the dependence of the logarithm of the observed rate constant (λU) of folding on denaturant concentration. In this study, the unfolding mechanism of the wild-type (wt) and E24A variants of monellin has been investigated, and both variants are shown to display upward curvatures in plots of log λU versus denaturant concentration. Curvature is distinctly more pronounced for E24A than for the wt protein. Kinetic unfolding studies of E24A were conducted over a range of denaturant concentrations and across a range of temperatures, and the kinetic data were globally analyzed assuming two parallel pathways L and H, which proceed through transition states TS(L) and TS(H), respectively. The observation of the upward curvature in the unfolding kinetics permitted a thermodynamic analysis of how unfolding switches from one pathway to the other upon a change in unfolding conditions. The m −N and ΔCp values indicate that TSL is more compact than TS(H). The major contribution to the free energy of activation on either pathway is seen to be enthalpic and not entropic in origin.
直接证明蛋白质折叠或展开反应存在竞争途径是困难的。到目前为止,在折叠或展开研究中很少看到的多途径的直接特征是折叠观察到的速率常数(λU)的对数对变性剂浓度的依赖性呈向上弯曲。在这项研究中,研究了野型(wt)和 E24A 变体的甜味蛋白的展开机制,并且两种变体的折叠实验均显示出 log λU 与变性剂浓度的关系呈向上弯曲。E24A 的曲率明显比 wt 蛋白更为明显。E24A 的动力学展开研究在一系列变性剂浓度和一系列温度下进行,并且动力学数据通过假设两个平行途径 L 和 H 进行全局分析,它们分别通过过渡态 TS(L)和 TS(H)进行。在展开动力学中观察到向上弯曲,允许对展开条件变化时展开如何从一条途径切换到另一条途径进行热力学分析。m-N 和 ΔCp 值表明 TSL 比 TS(H)更紧凑。在任何途径上,对活化自由能的主要贡献都是源于焓而不是熵。