Whitehead Anne, Su Ting-Li, Thygesen Helene, Sperrin Matthew, Harbron Chris
Medical and Pharmaceutical Statistics Research Unit, Department of Mathematics and Statistics, Lancaster University, Lancaster, UK.
Pharm Stat. 2013 Sep-Oct;12(5):300-8. doi: 10.1002/pst.1583. Epub 2013 Jul 30.
Pre-clinical studies may be used to screen for synergistic combinations of drugs. The types of in vitro assays used for this purpose will depend upon the disease area of interest. In oncology, one frequently used study measures cell line viability: cells placed into wells on a plate are treated with doses of two compounds, and cell viability is assessed from an optical density measurement corrected for blank well values. These measurements are often transformed and analysed as cell survival relative to untreated wells. The monotherapies are assumed to follow the Hill equation with lower and upper asymptotes at 0 and 1, respectively. Additionally, a common variance about the dose-response curve may be assumed. In this paper, we consider two models for incorporating synergy parameters. We investigate the effect of different models of biological variation on the assessment of synergy from both of these models. We show that estimates of the synergy parameters appear to be robust, even when estimates of the other model parameters are biased. Using untransformed measurements provides better coverage of the 95% confidence intervals for the synergy parameters than using transformed measurements, and the requirement to fit the upper asymptote does not cause difficulties. Assuming homoscedastic variances appears to be robust. The added complexity of determining and fitting an appropriate heteroscedastic model does not seem to be justified.
临床前研究可用于筛选药物的协同组合。用于此目的的体外试验类型将取决于感兴趣的疾病领域。在肿瘤学中,一种常用的研究方法是测量细胞系活力:将细胞接种到平板孔中,用两种化合物的剂量进行处理,然后通过针对空白孔值校正的光密度测量来评估细胞活力。这些测量值通常会进行转换,并作为相对于未处理孔的细胞存活率进行分析。单一疗法假定遵循希尔方程,下限和上限渐近线分别为0和1。此外,可以假定剂量反应曲线存在共同方差。在本文中,我们考虑两种纳入协同参数的模型。我们研究了不同生物变异模型对这两种模型协同作用评估的影响。我们表明,即使其他模型参数的估计存在偏差,协同参数的估计似乎也是稳健的。使用未转换的测量值比使用转换后的测量值能为协同参数提供更好的95%置信区间覆盖范围,并且拟合上限渐近线的要求不会造成困难。假定同方差似乎是稳健的。确定和拟合合适的异方差模型所增加的复杂性似乎没有道理。