• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

X 射线晶体学证据表明,来自 Marinomonas mediterranea 的 L-赖氨酸 ε-氧化酶中存在半胱氨酸色氨酸醌辅因子。

X-ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in L-lysine ε-oxidase from Marinomonas mediterranea.

机构信息

Biotechnology Research Center and Department of Biotechnology, Toyama Prefectural University, 5180 Kurokawa, Imizu, Toyama 939-0398, Japan.

出版信息

J Biochem. 2013 Sep;154(3):233-6. doi: 10.1093/jb/mvt070. Epub 2013 Aug 1.

DOI:10.1093/jb/mvt070
PMID:23908359
Abstract

We have determined the x-ray crystal structure of L-lysine ε-oxidase from Marinomonas mediterranea in its native and L-lysine-complex forms at 1.94- and 1.99-Å resolution, respectively. In the native enzyme, electron densities clearly indicate the presence of cysteine tryptophylquinone (CTQ) previously identified in quinohemoprotein amine dehydrogenase. In the L-lysine-complex, an electron density corresponding to the bound L-lysine shows that its ε-amino group is attached to the C6 carbonyl group of CTQ, suggesting the formation of a Schiff-base intermediate. Collectively, the present crystal structure provides the first example of an enzyme employing a tryptophylquinone cofactor in an amine oxidase.

摘要

我们已经确定了来自 Marinomonas mediterranea 的 L-赖氨酸 ε-氧化酶在其天然形式和 L-赖氨酸复合物形式下的 X 射线晶体结构,分辨率分别为 1.94 和 1.99Å。在天然酶中,电子密度清楚地表明存在半胱氨酸色氨酸醌(CTQ),这在醌核苷酸胺脱氢酶中已经被鉴定。在 L-赖氨酸复合物中,与结合的 L-赖氨酸相对应的电子密度表明其 ε-氨基与 CTQ 的 C6 羰基相连,表明形成了希夫碱中间产物。总的来说,目前的晶体结构提供了第一个使用色氨酸醌辅因子的胺氧化酶的例子。

相似文献

1
X-ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in L-lysine ε-oxidase from Marinomonas mediterranea.X 射线晶体学证据表明,来自 Marinomonas mediterranea 的 L-赖氨酸 ε-氧化酶中存在半胱氨酸色氨酸醌辅因子。
J Biochem. 2013 Sep;154(3):233-6. doi: 10.1093/jb/mvt070. Epub 2013 Aug 1.
2
Characterization of recombinant biosynthetic precursors of the cysteine tryptophylquinone cofactors of l-lysine-epsilon-oxidase and glycine oxidase from Marinomonas mediterranea.地中海海单胞菌中L-赖氨酸-ε-氧化酶和甘氨酸氧化酶的半胱氨酸色氨酰醌辅因子的重组生物合成前体的表征
Biochim Biophys Acta. 2015 Sep;1854(9):1123-31. doi: 10.1016/j.bbapap.2014.12.018. Epub 2014 Dec 23.
3
Steady-state kinetic mechanism of LodA, a novel cysteine tryptophylquinone-dependent oxidase.LodA 的稳态动力学机制,一种新型半胱氨酸色氨酸醌依赖氧化酶。
FEBS Lett. 2014 Mar 3;588(5):752-6. doi: 10.1016/j.febslet.2014.01.021. Epub 2014 Jan 23.
4
Interaction of GoxA with Its Modifying Enzyme and Its Subunit Assembly Are Dependent on the Extent of Cysteine Tryptophylquinone Biosynthesis.GoxA与其修饰酶的相互作用及其亚基组装取决于半胱氨酸色氨酰醌生物合成的程度。
Biochemistry. 2016 Apr 26;55(16):2305-8. doi: 10.1021/acs.biochem.6b00274. Epub 2016 Apr 15.
5
Kinetic and structural evidence that Asp-678 plays multiple roles in catalysis by the quinoprotein glycine oxidase.动力学和结构证据表明,天冬氨酸 678 在醌蛋白甘氨酸氧化酶的催化中发挥多种作用。
J Biol Chem. 2019 Nov 15;294(46):17463-17470. doi: 10.1074/jbc.RA119.011255. Epub 2019 Oct 15.
6
LodB is required for the recombinant synthesis of the quinoprotein L-lysine-ε-oxidase from Marinomonas mediterranea.LodB 对于重组合成来自 Marinomonas mediterranea 的醌蛋白 L-赖氨酸-ε-氧化酶是必需的。
Appl Microbiol Biotechnol. 2014 Apr;98(7):2981-9. doi: 10.1007/s00253-013-5168-3. Epub 2013 Aug 18.
7
Roles of Copper and a Conserved Aspartic Acid in the Autocatalytic Hydroxylation of a Specific Tryptophan Residue during Cysteine Tryptophylquinone Biogenesis.铜和保守天冬氨酸在半胱氨酸色氨酰醌生物合成过程中特定色氨酸残基的自催化羟基化反应中的作用
Biochemistry. 2017 Feb 21;56(7):997-1004. doi: 10.1021/acs.biochem.6b01137. Epub 2017 Feb 10.
8
Determination of plasma and serum L-lysine using L-lysine epsilon-oxidase from Marinomonas mediterranea NBRC 103028(T).利用来自 Marinomonas mediterranea NBRC 103028(T) 的 L-赖氨酸 ε-氧化酶测定血浆和血清中的 L-赖氨酸。
Anal Biochem. 2010 Nov 1;406(1):19-23. doi: 10.1016/j.ab.2010.06.045. Epub 2010 Jul 1.
9
A novel type of lysine oxidase: L-lysine-epsilon-oxidase.一种新型赖氨酸氧化酶:L-赖氨酸-ε-氧化酶。
Biochim Biophys Acta. 2006 Oct;1764(10):1577-85. doi: 10.1016/j.bbapap.2006.08.014. Epub 2006 Sep 3.
10
The Redox Properties of a Cysteine Tryptophylquinone-Dependent Glycine Oxidase Are Distinct from Those of Tryptophylquinone-Dependent Dehydrogenases.半胱氨酸色氨酸醌依赖型甘氨酸氧化酶的氧化还原性质与色氨酸醌依赖型脱氢酶的不同。
Biochemistry. 2019 Apr 30;58(17):2243-2249. doi: 10.1021/acs.biochem.9b00104. Epub 2019 Apr 12.

引用本文的文献

1
Protein-derived cofactors: chemical innovations expanding enzyme catalysis.蛋白质衍生的辅因子:拓展酶催化作用的化学创新
Chem Soc Rev. 2025 May 6;54(9):4502-4530. doi: 10.1039/d4cs00981a.
2
Open and closed structures of L-arginine oxidase by cryo-electron microscopy and X-ray crystallography.通过冷冻电子显微镜和X射线晶体学解析L-精氨酸氧化酶的开放和封闭结构
J Biochem. 2025 Jan 6;177(1):27-36. doi: 10.1093/jb/mvae070.
3
Amino Acid Chirality: Stereospecific Conversion and Physiological Implications.氨基酸手性:立体特异性转化及其生理意义
ACS Omega. 2024 Jan 26;9(5):5084-5099. doi: 10.1021/acsomega.3c08305. eCollection 2024 Feb 6.
4
Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining.序列数据挖掘解析祖先 L-赖氨酸氧化酶的催化机制。
J Biol Chem. 2021 Sep;297(3):101043. doi: 10.1016/j.jbc.2021.101043. Epub 2021 Aug 4.
5
Functional and structural characterization of a flavoprotein monooxygenase essential for biogenesis of tryptophylquinone cofactor.色氨酸醌辅因子生物合成所必需的黄素蛋白单加氧酶的功能和结构特征。
Nat Commun. 2021 Feb 10;12(1):933. doi: 10.1038/s41467-021-21200-9.
6
Roles of active-site residues in catalysis, substrate binding, cooperativity, and the reaction mechanism of the quinoprotein glycine oxidase.活性部位残基在催化、底物结合、协同作用以及黄素蛋白糖酸氧化酶反应机制中的作用。
J Biol Chem. 2020 May 8;295(19):6472-6481. doi: 10.1074/jbc.RA120.013198. Epub 2020 Mar 31.
7
Kinetic and structural evidence that Asp-678 plays multiple roles in catalysis by the quinoprotein glycine oxidase.动力学和结构证据表明,天冬氨酸 678 在醌蛋白甘氨酸氧化酶的催化中发挥多种作用。
J Biol Chem. 2019 Nov 15;294(46):17463-17470. doi: 10.1074/jbc.RA119.011255. Epub 2019 Oct 15.
8
Characterization of PlGoxB, a flavoprotein required for cysteine tryptophylquinone biosynthesis in glycine oxidase from Pseudoalteromonas luteoviolacea.鉴定来自黄杆菌属假交替单胞菌的甘氨酸氧化酶中半胱氨酸色氨酸醌生物合成所需的黄素蛋白 PlGoxB。
Arch Biochem Biophys. 2019 Oct 15;674:108110. doi: 10.1016/j.abb.2019.108110. Epub 2019 Sep 18.
9
Following the Evolutionary Track of a Highly Specific l-Arginine Oxidase by Reconstruction and Biochemical Analysis of Ancestral and Native Enzymes.通过重建和生化分析祖先和天然酶,追踪高度特异性 l-精氨酸氧化酶的进化轨迹。
Appl Environ Microbiol. 2019 May 30;85(12). doi: 10.1128/AEM.00459-19. Print 2019 Jun 15.
10
Structural and Spectroscopic Characterization of a Product Schiff Base Intermediate in the Reaction of the Quinoprotein Glycine Oxidase, GoxA.醌蛋白甘氨酸氧化酶 GoxA 反应中产物席夫碱中间物的结构和光谱特征。
Biochemistry. 2019 Feb 12;58(6):706-713. doi: 10.1021/acs.biochem.8b01145. Epub 2019 Jan 15.