Department of Physics, Banaras Hindu University, Varanasi 221 005, India.
Spectrochim Acta A Mol Biomol Spectrosc. 2013 Dec;116:74-83. doi: 10.1016/j.saa.2013.06.041. Epub 2013 Jun 27.
Raman spectra of the biologically important molecule sarcosine (SAR) (C3H7NO2) were studied experimentally in aqueous solution at different concentrations. These spectra were also calculated theoretically using density functional theory (DFT) at the B3LYP/6-311++G(d,p) level. Further, all the observed normal modes were assigned through potential energy distribution (PED). Geometry optimization of SAR produced its three conformers with slightly different energies. The lowest energy conformer of SAR was selected for a systematic solvation study wherein different numbers of water molecules (nW, n=1-9) were placed near it. In the SAR-9W complex, the SAR molecule is located almost at the center of the cage of 9 water molecules. Geometries of different oligomers of SAR (dimer, trimer, tetramer and pentamer) were also optimized in aqueous media taking the input structures from crystallographic data and using the polarizable continuum (PCM). Proton transfer required for the formation of the zwitterionic form of SAR was found to occur when the number of water molecules in the first hydration shell was six or more.
研究了不同浓度水溶液中生物重要分子肌氨酸(SAR)(C3H7NO2)的拉曼光谱。这些光谱也使用密度泛函理论(DFT)在 B3LYP/6-311++G(d,p)水平上进行了理论计算。此外,通过势能分布(PED)对所有观察到的正则模式进行了分配。SAR 的几何优化产生了三个能量略有不同的构象体。选择 SAR 的最低能量构象体进行系统的溶剂化研究,其中在其附近放置了不同数量的水分子(nW,n=1-9)。在 SAR-9W 配合物中,SAR 分子位于 9 个水分子笼的中心附近。SAR 的不同低聚物(二聚体、三聚体、四聚体和五聚体)的几何形状也在水介质中进行了优化,输入结构来自晶体数据,并使用极化连续体(PCM)。当第一水合壳中的水分子数为六或更多时,发现 SAR 形成两性离子形式所需的质子转移发生。