• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

肌氨酸水合作用、两性离子形成及其在水介质中不同低聚物的研究:拉曼光谱和理论研究。

Study of hydration of sarcosine, formation of its zwitterion and their different oligomers in aqueous media: a Raman spectroscopic and theoretical study.

机构信息

Department of Physics, Banaras Hindu University, Varanasi 221 005, India.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2013 Dec;116:74-83. doi: 10.1016/j.saa.2013.06.041. Epub 2013 Jun 27.

DOI:10.1016/j.saa.2013.06.041
PMID:23912045
Abstract

Raman spectra of the biologically important molecule sarcosine (SAR) (C3H7NO2) were studied experimentally in aqueous solution at different concentrations. These spectra were also calculated theoretically using density functional theory (DFT) at the B3LYP/6-311++G(d,p) level. Further, all the observed normal modes were assigned through potential energy distribution (PED). Geometry optimization of SAR produced its three conformers with slightly different energies. The lowest energy conformer of SAR was selected for a systematic solvation study wherein different numbers of water molecules (nW, n=1-9) were placed near it. In the SAR-9W complex, the SAR molecule is located almost at the center of the cage of 9 water molecules. Geometries of different oligomers of SAR (dimer, trimer, tetramer and pentamer) were also optimized in aqueous media taking the input structures from crystallographic data and using the polarizable continuum (PCM). Proton transfer required for the formation of the zwitterionic form of SAR was found to occur when the number of water molecules in the first hydration shell was six or more.

摘要

研究了不同浓度水溶液中生物重要分子肌氨酸(SAR)(C3H7NO2)的拉曼光谱。这些光谱也使用密度泛函理论(DFT)在 B3LYP/6-311++G(d,p)水平上进行了理论计算。此外,通过势能分布(PED)对所有观察到的正则模式进行了分配。SAR 的几何优化产生了三个能量略有不同的构象体。选择 SAR 的最低能量构象体进行系统的溶剂化研究,其中在其附近放置了不同数量的水分子(nW,n=1-9)。在 SAR-9W 配合物中,SAR 分子位于 9 个水分子笼的中心附近。SAR 的不同低聚物(二聚体、三聚体、四聚体和五聚体)的几何形状也在水介质中进行了优化,输入结构来自晶体数据,并使用极化连续体(PCM)。当第一水合壳中的水分子数为六或更多时,发现 SAR 形成两性离子形式所需的质子转移发生。

相似文献

1
Study of hydration of sarcosine, formation of its zwitterion and their different oligomers in aqueous media: a Raman spectroscopic and theoretical study.肌氨酸水合作用、两性离子形成及其在水介质中不同低聚物的研究:拉曼光谱和理论研究。
Spectrochim Acta A Mol Biomol Spectrosc. 2013 Dec;116:74-83. doi: 10.1016/j.saa.2013.06.041. Epub 2013 Jun 27.
2
Vibrational spectra of cysteine zwitterion and mechanism of its formation: bulk and specific solvent effects and geometry optimization in aqueous media.半胱氨酸两性离子的振动光谱及其形成机制:本体和特定溶剂效应以及在水介质中的几何优化
Spectrochim Acta A Mol Biomol Spectrosc. 2009 Aug 15;73(4):719-29. doi: 10.1016/j.saa.2009.03.011. Epub 2009 Mar 28.
3
Hydration and speciation studies of Mn2+ in aqueous solution with simple monovalent anions (ClO4-, NO3-, Cl-, Br-).水合作用和 Mn2+在简单单价阴离子(ClO4-、NO3-、Cl-、Br-)水溶液中的形态研究。
Dalton Trans. 2013 Oct 28;42(40):14460-72. doi: 10.1039/c3dt51493e.
4
Molecular interactions of 2'-deoxyguanosine 5'-monophosphate with glycine in aqueous media probed via concentration and pH dependent Raman spectroscopic investigations and DFT study.通过浓度和 pH 值依赖的拉曼光谱研究和密度泛函理论研究探测 2'-脱氧鸟苷 5'-单磷酸与甘氨酸在水介质中的分子相互作用。
Phys Chem Chem Phys. 2012 Nov 7;14(41):14315-24. doi: 10.1039/c2cp41205e.
5
Vibrational spectra of alpha-amino acids in the zwitterionic state in aqueous solution and the solid state: DFT calculations and the influence of hydrogen bonding.水溶液和固态中两性离子状态的α-氨基酸的振动光谱:密度泛函理论计算及氢键的影响
J Phys Chem A. 2008 Oct 16;112(41):10333-47. doi: 10.1021/jp8037945. Epub 2008 Sep 25.
6
Excited state proton transfer in guanine in the gas phase and in water solution: a theoretical study.气相和水溶液中鸟嘌呤的激发态质子转移:一项理论研究。
J Phys Chem A. 2005 Sep 1;109(34):7775-80. doi: 10.1021/jp052340i.
7
The first step in glycine solvation: the glycine-water complex.甘氨酸溶剂化的第一步:甘氨酸-水配合物。
J Phys Chem B. 2010 Nov 25;114(46):15075-8. doi: 10.1021/jp107539z. Epub 2010 Oct 22.
8
A study of cysteamine ionization in solution by Raman spectroscopy and theoretical modeling.通过拉曼光谱和理论建模对溶液中半胱胺离子化的研究。
J Phys Chem A. 2006 Dec 21;110(50):13394-404. doi: 10.1021/jp063816g.
9
Monopeptide versus monopeptoid: insights on structure and hydration of aqueous alanine and sarcosine via X-ray absorption spectroscopy.一肽与假肽:通过 X 射线吸收光谱法研究水合丙氨酸和肌氨酸的结构和水合作用。
J Phys Chem B. 2010 Apr 8;114(13):4702-9. doi: 10.1021/jp911007k.
10
Vibrational spectroscopic studies and density functional theory calculations of speciation in the CO2-water system.二氧化碳-水体系中物种形成的振动光谱研究与密度泛函理论计算
Appl Spectrosc. 2006 Feb;60(2):130-44. doi: 10.1366/000370206776023421.

引用本文的文献

1
A DFT study of the effect of hydrostatic pressure on the structure and electronic properties of sarcosine crystal.静水压对肌氨酸晶体结构和电子性质影响的密度泛函理论研究。
J Mol Model. 2024 Oct 4;30(11):368. doi: 10.1007/s00894-024-06110-z.
2
Silica Nanospheres Coated Silver Islands as an Effective Opto-Plasmonic SERS Active Platform for Rapid and Sensitive Detection of Prostate Cancer Biomarkers.硅纳米球包覆银岛作为一种有效的光等离子体 SERS 活性平台,用于快速灵敏地检测前列腺癌生物标志物。
Molecules. 2022 Nov 13;27(22):7821. doi: 10.3390/molecules27227821.