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神经发育和疾病中的胞嘧啶修饰。

Cytosine modifications in neurodevelopment and diseases.

机构信息

Department of Human Genetics, Emory University School of Medicine, 615 Michael Street, Suite 301, Atlanta, GA, 30322, USA.

出版信息

Cell Mol Life Sci. 2014 Feb;71(3):405-18. doi: 10.1007/s00018-013-1433-y. Epub 2013 Aug 3.

DOI:10.1007/s00018-013-1433-y
PMID:23912899
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3870031/
Abstract

DNA methylation has been studied comprehensively and linked to both normal neurodevelopment and neurological diseases. The recent identification of several new DNA modifications, including 5-hydroxymethylcytosine, 5-formylcytosine, and 5-carboxylcytosine, has given us a new perspective on the previously observed plasticity in 5mC-dependent regulatory processes. Here, we review the latest research into these cytosine modifications, focusing mainly on their roles in neurodevelopment and diseases.

摘要

DNA 甲基化已得到全面研究,并与正常神经发育和神经疾病相关联。最近鉴定出几种新的 DNA 修饰,包括 5-羟甲基胞嘧啶、5-甲酰胞嘧啶和 5-羧基胞嘧啶,为我们提供了一个新的视角,即以前在 5mC 依赖的调节过程中观察到的可塑性。在这里,我们综述了这些胞嘧啶修饰的最新研究,主要集中在它们在神经发育和疾病中的作用。

相似文献

1
Cytosine modifications in neurodevelopment and diseases.神经发育和疾病中的胞嘧啶修饰。
Cell Mol Life Sci. 2014 Feb;71(3):405-18. doi: 10.1007/s00018-013-1433-y. Epub 2013 Aug 3.
2
DNA modifications and neurological disorders.DNA 修饰与神经紊乱。
Neurotherapeutics. 2013 Oct;10(4):556-67. doi: 10.1007/s13311-013-0223-4.
3
Dysregulation and prognostic potential of 5-methylcytosine (5mC), 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC) levels in prostate cancer.前列腺癌中 5-甲基胞嘧啶(5mC)、5-羟甲基胞嘧啶(5hmC)、5-甲酰胞嘧啶(5fC)和 5-羧基胞嘧啶(5caC)水平的失调及其预后潜力。
Clin Epigenetics. 2018 Aug 7;10(1):105. doi: 10.1186/s13148-018-0540-x.
4
DNA methylation dynamics in neurogenesis.神经发生中的 DNA 甲基化动态。
Epigenomics. 2016 Mar;8(3):401-14. doi: 10.2217/epi.15.119. Epub 2016 Mar 7.
5
Effects of Tet-induced oxidation products of 5-methylcytosine on Dnmt1- and DNMT3a-mediated cytosine methylation.四氢叶酸诱导的5-甲基胞嘧啶氧化产物对Dnmt1和DNMT3a介导的胞嘧啶甲基化的影响。
Mol Biosyst. 2014 Jul;10(7):1749-52. doi: 10.1039/c4mb00150h. Epub 2014 Apr 30.
6
Analysis of 5-Carboxylcytosine Distribution Using DNA Immunoprecipitation.使用 DNA 免疫沉淀分析 5-羧基胞嘧啶分布
Methods Mol Biol. 2021;2198:311-319. doi: 10.1007/978-1-0716-0876-0_24.
7
Epigenetic Modifications of Cytosine: Biophysical Properties, Regulation, and Function in Mammalian DNA.胞嘧啶的表观遗传修饰:哺乳动物 DNA 中的生物物理特性、调控和功能。
Bioessays. 2018 Mar;40(3). doi: 10.1002/bies.201700199. Epub 2018 Jan 25.
8
Immunochemical Detection of Modified Species of Cytosine in Plant Tissues.免疫化学检测植物组织中修饰的胞嘧啶种类。
Methods Mol Biol. 2021;2198:209-216. doi: 10.1007/978-1-0716-0876-0_17.
9
Cross-region reduction in 5-hydroxymethylcytosine in Alzheimer's disease brain.阿尔茨海默病大脑中5-羟甲基胞嘧啶的跨区域减少。
Neurobiol Aging. 2014 Aug;35(8):1850-4. doi: 10.1016/j.neurobiolaging.2014.02.002. Epub 2014 Feb 6.
10
DNA repair enzymes ALKBH2, ALKBH3, and AlkB oxidize 5-methylcytosine to 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxylcytosine in vitro.DNA 修复酶 ALKBH2、ALKBH3 和 AlkB 在体外将 5-甲基胞嘧啶氧化为 5-羟甲基胞嘧啶、5-甲酰胞嘧啶和 5-羧基胞嘧啶。
Nucleic Acids Res. 2019 Jun 20;47(11):5522-5529. doi: 10.1093/nar/gkz395.

引用本文的文献

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StableDNAm: towards a stable and efficient model for predicting DNA methylation based on adaptive feature correction learning.StableDNAm:一种基于自适应特征校正学习的稳定且高效的 DNA 甲基化预测模型。
BMC Genomics. 2023 Dec 5;24(1):742. doi: 10.1186/s12864-023-09802-7.
2
Hypothalamic DNA 5-hydroxymethylation levels are altered by diet-induced weight gain during the development of obesity in a sex-specific manner.饮食诱导的体重增加会以性别特异性的方式改变肥胖发展过程中下丘脑的 DNA 5-羟甲基化水平。
Brain Res. 2023 Oct 15;1817:148478. doi: 10.1016/j.brainres.2023.148478. Epub 2023 Jul 6.
3
Reduced non-CpG methylation is a potential epigenetic target after spinal cord injury.非CpG甲基化水平降低是脊髓损伤后一个潜在的表观遗传靶点。
Neural Regen Res. 2023 Nov;18(11):2489-2496. doi: 10.4103/1673-5374.371399.
4
Social defeat stress induces genome-wide 5mC and 5hmC alterations in the mouse brain.社交挫败应激诱导小鼠大脑中全基因组 5mC 和 5hmC 的改变。
G3 (Bethesda). 2023 Aug 9;13(8). doi: 10.1093/g3journal/jkad114.
5
MultiScale-CNN-4mCPred: a multi-scale CNN and adaptive embedding-based method for mouse genome DNA N4-methylcytosine prediction.多尺度 CNN-4mCPred:一种基于多尺度 CNN 和自适应嵌入的方法,用于预测小鼠基因组 DNA N4-甲基胞嘧啶。
BMC Bioinformatics. 2023 Jan 18;24(1):21. doi: 10.1186/s12859-023-05135-0.
6
Systematic Analysis and Accurate Identification of DNA N4-Methylcytosine Sites by Deep Learning.基于深度学习的DNA N4-甲基胞嘧啶位点的系统分析与准确识别
Front Microbiol. 2022 Mar 15;13:843425. doi: 10.3389/fmicb.2022.843425. eCollection 2022.
7
Gene by environment interaction mouse model reveals a functional role for 5-hydroxymethylcytosine in neurodevelopmental disorders.基因-环境互作的小鼠模型揭示了 5-羟甲基胞嘧啶在神经发育障碍中的功能作用。
Genome Res. 2022 Feb;32(2):266-279. doi: 10.1101/gr.276137.121. Epub 2021 Dec 23.
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i4mC-Deep: An Intelligent Predictor of N4-Methylcytosine Sites Using a Deep Learning Approach with Chemical Properties.i4mC-Deep:一种基于深度学习方法并结合化学性质预测 N4-甲基胞嘧啶位点的智能预测器。
Genes (Basel). 2021 Jul 23;12(8):1117. doi: 10.3390/genes12081117.
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Neurodegenerative movement disorders: An epigenetics perspective and promise for the future.神经退行性运动障碍:从表观遗传学角度展望未来。
Neuropathol Appl Neurobiol. 2021 Dec;47(7):897-909. doi: 10.1111/nan.12757. Epub 2021 Aug 5.
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4mCPred-CNN-Prediction of DNA N4-Methylcytosine in the Mouse Genome Using a Convolutional Neural Network.4mCPred-CNN-使用卷积神经网络预测小鼠基因组中的 DNA N4-甲基胞嘧啶。
Genes (Basel). 2021 Feb 20;12(2):296. doi: 10.3390/genes12020296.

本文引用的文献

1
Genome-wide loss of 5-hmC is a novel epigenetic feature of Huntington's disease.全基因组范围内 5-羟甲基胞嘧啶的缺失是亨廷顿病的一种新型表观遗传特征。
Hum Mol Genet. 2013 Sep 15;22(18):3641-53. doi: 10.1093/hmg/ddt214. Epub 2013 May 12.
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Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming.全基因组 5- 羟甲基胞嘧啶图谱分析揭示了其在表观遗传引发中的作用。
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Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.全基因组分析揭示了 TET 和 TDG 依赖的 5-甲基胞嘧啶氧化动力学。
Cell. 2013 Apr 25;153(3):692-706. doi: 10.1016/j.cell.2013.04.002. Epub 2013 Apr 18.
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Ascorbate induces ten-eleven translocation (Tet) methylcytosine dioxygenase-mediated generation of 5-hydroxymethylcytosine.抗坏血酸诱导十号十一号转位(Tet)甲基胞嘧啶双加氧酶介导的 5-羟甲基胞嘧啶生成。
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Dynamics of 5-hydroxymethylcytosine and chromatin marks in Mammalian neurogenesis.哺乳动物神经发生中 5-羟甲基胞嘧啶和染色质标记的动态变化。
Cell Rep. 2013 Feb 21;3(2):291-300. doi: 10.1016/j.celrep.2013.01.011. Epub 2013 Feb 9.
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NANOG-dependent function of TET1 and TET2 in establishment of pluripotency.NANOG 依赖的 TET1 和 TET2 功能在多能性建立中的作用。
Nature. 2013 Mar 21;495(7441):370-4. doi: 10.1038/nature11925. Epub 2013 Feb 10.
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