• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

戛纳8病毒的全基因组序列,“马赛病毒科”拟议家族的一个新成员。

Complete genome sequence of Cannes 8 virus, a new member of the proposed family "Marseilleviridae".

作者信息

Aherfi Sarah, Pagnier Isabelle, Fournous Ghislain, Raoult Didier, La Scola Bernard, Colson Philippe

机构信息

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63 CNRS 7278 IRD 198 INSERM U1095, Facultés de Médecine et de Pharmacie, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 05, France.

出版信息

Virus Genes. 2013 Dec;47(3):550-5. doi: 10.1007/s11262-013-0965-4. Epub 2013 Aug 4.

DOI:10.1007/s11262-013-0965-4
PMID:23912978
Abstract

Marseillevirus is a giant virus that was isolated in 2007 by culturing water collected from a cooling tower in Paris, France, on Acanthamoeba polyphaga. Since then, five other marseilleviruses have been detected in environmental or human samples. The genomes of two of the six marseilleviruses have been described in detail. We describe herein the genome of Cannes 8 virus, a new member of the proposed family "Marseilleviridae." Cannes 8 virus was isolated from water collected from a cooling tower in Cannes in southeastern France. Its genome is a circular double-stranded DNA molecule with 374,041 base pairs, larger than the Marseillevirus and Lausannevirus genomes. This genome harbors 484 open reading frames predicted to encode proteins with sizes ranging from 50 to 1,537 amino acids, among which 380 (79%) and 272 (56%) are bona fide orthologs of Marseillevirus and Lausannevirus proteins, respectively. In addition, 407 and 336 predicted proteins have significant hits against Marseillevirus and Lausannevirus proteins, respectively, and 294 proteins are shared by all three marseilleviruses. The Cannes 8 virus genome has a high level of collinearity (for 96% of orthologs) with the Marseillevirus genome. About two-thirds of the Cannes 8 virus gene repertoire is composed of family ORFans. The description and annotation of the genomes of new marseilleviruses that will undoubtedly be recovered from environmental or clinical samples will be helpful to increase our knowledge of the pan-genome of the family "Marseilleviridae."

摘要

马赛病毒是一种巨型病毒,于2007年通过在法国巴黎一座冷却塔采集的水样中培养多食棘阿米巴而分离得到。自那时起,在环境样本或人类样本中又检测到另外五种马赛病毒。已详细描述了六种马赛病毒中两种的基因组。我们在此描述戛纳8病毒的基因组,它是拟议的“马赛病毒科”的一个新成员。戛纳8病毒是从法国东南部戛纳一座冷却塔采集的水样中分离得到的。其基因组是一个含有374,041个碱基对的环状双链DNA分子,比马赛病毒和洛桑病毒的基因组更大。该基因组包含484个开放阅读框,预计编码大小从50到1537个氨基酸的蛋白质,其中分别有380个(79%)和272个(56%)是马赛病毒和洛桑病毒蛋白质的真正直系同源物。此外,分别有407个和336个预测蛋白质与马赛病毒和洛桑病毒的蛋白质有显著匹配,并且有294个蛋白质为所有三种马赛病毒所共有。戛纳8病毒基因组与马赛病毒基因组具有高度的共线性(96%的直系同源物)。戛纳8病毒约三分之二的基因库由家族孤儿基因组成。对无疑将从环境或临床样本中发现的新马赛病毒基因组的描述和注释,将有助于增加我们对“马赛病毒科”泛基因组的了解。

相似文献

1
Complete genome sequence of Cannes 8 virus, a new member of the proposed family "Marseilleviridae".戛纳8病毒的全基因组序列,“马赛病毒科”拟议家族的一个新成员。
Virus Genes. 2013 Dec;47(3):550-5. doi: 10.1007/s11262-013-0965-4. Epub 2013 Aug 4.
2
Complete genome sequence of Tunisvirus, a new member of the proposed family Marseilleviridae.突尼斯病毒全基因组序列,一种拟议的马赛病毒科新成员。
Arch Virol. 2014 Sep;159(9):2349-58. doi: 10.1007/s00705-014-2023-5. Epub 2014 Apr 26.
3
Genome analysis of the first Marseilleviridae representative from Australia indicates that most of its genes contribute to virus fitness.对来自澳大利亚的首个马赛病毒科代表病毒进行的基因组分析表明,其大多数基因对病毒适应性有贡献。
J Virol. 2014 Dec;88(24):14340-9. doi: 10.1128/JVI.02414-14. Epub 2014 Oct 1.
4
A Brazilian Marseillevirus Is the Founding Member of a Lineage in Family Marseilleviridae.一种巴西马赛病毒是马赛病毒科一个谱系的创始成员。
Viruses. 2016 Mar 10;8(3):76. doi: 10.3390/v8030076.
5
"Marseilleviridae", a new family of giant viruses infecting amoebae.马赛病毒科,一种感染变形虫的巨型病毒新科。
Arch Virol. 2013 Apr;158(4):915-20. doi: 10.1007/s00705-012-1537-y. Epub 2012 Nov 29.
6
Morphological and Taxonomic Properties of Tokyovirus, the First Marseilleviridae Member Isolated from Japan.东京病毒的形态学和分类学特性,首个从日本分离出的马赛病毒科成员
Microbes Environ. 2016 Dec 23;31(4):442-448. doi: 10.1264/jsme2.ME16107. Epub 2016 Nov 19.
7
The expanding family Marseilleviridae.不断扩大的马赛病毒科家族。
Virology. 2014 Oct;466-467:27-37. doi: 10.1016/j.virol.2014.07.014. Epub 2014 Aug 5.
8
Marseilleviruses: An Update in 2021.马赛病毒:2021年最新情况
Front Microbiol. 2021 Jun 2;12:648731. doi: 10.3389/fmicb.2021.648731. eCollection 2021.
9
The genomic and phylogenetic analysis of raises questions about the evolution of Marseilleviridae lineages and their taxonomical organization.对[具体内容缺失]的基因组和系统发育分析引发了关于马赛病毒科谱系的进化及其分类组织的问题。
J Virol. 2024 Jun 13;98(6):e0051324. doi: 10.1128/jvi.00513-24. Epub 2024 May 16.
10
A new marseillevirus isolated in Southern Brazil from Limnoperna fortunei.一种从巴西南部的福寿螺中分离出的新型马赛病毒。
Sci Rep. 2016 Oct 14;6:35237. doi: 10.1038/srep35237.

引用本文的文献

1
Spatiotemporal dynamics of giant viruses within a deep freshwater lake reveal a distinct dark-water community.巨病毒在深淡水湖中时空动态揭示了独特的暗水域群落。
ISME J. 2024 Jan 8;18(1). doi: 10.1093/ismejo/wrae182.
2
The genomic and phylogenetic analysis of raises questions about the evolution of Marseilleviridae lineages and their taxonomical organization.对[具体内容缺失]的基因组和系统发育分析引发了关于马赛病毒科谱系的进化及其分类组织的问题。
J Virol. 2024 Jun 13;98(6):e0051324. doi: 10.1128/jvi.00513-24. Epub 2024 May 16.
3
Pseudomonas aeruginosa Pangenome: Core and Accessory Genes of a Highly Resourceful Opportunistic Pathogen.

本文引用的文献

1
Marseillevirus-like virus recovered from blood donated by asymptomatic humans.从无症状供体血液中回收的马赛病毒样病毒。
J Infect Dis. 2013 Oct 1;208(7):1042-50. doi: 10.1093/infdis/jit292. Epub 2013 Jul 2.
2
First isolation of Mimivirus in a patient with pneumonia.首例肺炎患者感染巨型病毒。
Clin Infect Dis. 2013 Aug;57(4):e127-34. doi: 10.1093/cid/cit354. Epub 2013 May 24.
3
Evidence of the megavirome in humans.人类巨病毒组的证据。
铜绿假单胞菌泛基因组:一种资源丰富的机会性病原体的核心和辅助基因。
Adv Exp Med Biol. 2022;1386:3-28. doi: 10.1007/978-3-031-08491-1_1.
4
A Brief History of Giant Viruses' Studies in Brazilian Biomes.巴西生物群巨型病毒研究简史。
Viruses. 2022 Jan 19;14(2):191. doi: 10.3390/v14020191.
5
Marseilleviruses: An Update in 2021.马赛病毒:2021年最新情况
Front Microbiol. 2021 Jun 2;12:648731. doi: 10.3389/fmicb.2021.648731. eCollection 2021.
6
Marseilleviridae Lineage B Diversity and Bunch Formation Inhibited by Galactose.马赛病毒科 B 谱系多样性和聚集形成受半乳糖抑制。
Microbes Environ. 2021;36(1). doi: 10.1264/jsme2.ME20139.
7
Comparative Analysis of the Circular and Highly Asymmetrical Genomes.环状和高度不对称基因组的比较分析。
Viruses. 2020 Nov 7;12(11):1270. doi: 10.3390/v12111270.
8
Pan-genomic open reading frames: A potential supplement of single nucleotide polymorphisms in estimation of heritability and genomic prediction.泛基因组开放阅读框:在遗传力和基因组预测估计中,单核苷酸多态性的潜在补充。
PLoS Genet. 2020 Aug 24;16(8):e1008995. doi: 10.1371/journal.pgen.1008995. eCollection 2020 Aug.
9
The DNA methylation landscape of giant viruses.巨型病毒的 DNA 甲基化图谱。
Nat Commun. 2020 May 27;11(1):2657. doi: 10.1038/s41467-020-16414-2.
10
Protozoal giant viruses: agents potentially infectious to humans and animals.原生动物巨型病毒:对人类和动物具有潜在感染性的病原体
Virus Genes. 2019 Oct;55(5):574-591. doi: 10.1007/s11262-019-01684-w. Epub 2019 Jul 9.
J Clin Virol. 2013 Jul;57(3):191-200. doi: 10.1016/j.jcv.2013.03.018. Epub 2013 May 8.
4
CDD: conserved domains and protein three-dimensional structure.CDD:保守结构域和蛋白质三维结构。
Nucleic Acids Res. 2013 Jan;41(Database issue):D348-52. doi: 10.1093/nar/gks1243. Epub 2012 Nov 28.
5
"Marseilleviridae", a new family of giant viruses infecting amoebae.马赛病毒科,一种感染变形虫的巨型病毒新科。
Arch Virol. 2013 Apr;158(4):915-20. doi: 10.1007/s00705-012-1537-y. Epub 2012 Nov 29.
6
Microbial culturomics: paradigm shift in the human gut microbiome study.微生物培养组学:人类肠道微生物组研究的范式转变。
Clin Microbiol Infect. 2012 Dec;18(12):1185-93. doi: 10.1111/1469-0691.12023. Epub 2012 Oct 3.
7
How microbiology helps define the rhizome of life.微生物学如何帮助定义生命的根茎。
Front Cell Infect Microbiol. 2012 May 4;2:60. doi: 10.3389/fcimb.2012.00060. eCollection 2012.
8
Hidden evolutionary complexity of Nucleo-Cytoplasmic Large DNA viruses of eukaryotes.真核生物核质大 DNA 病毒的隐藏进化复杂性。
Virol J. 2012 Aug 14;9:161. doi: 10.1186/1743-422X-9-161.
9
Reclassification of giant viruses composing a fourth domain of life in the new order Megavirales.巨病毒的重新分类构成了新的巨型病毒目(Megavirales)中的生命的第四个领域。
Intervirology. 2012;55(5):321-32. doi: 10.1159/000336562. Epub 2012 Apr 14.
10
Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae.与更大基因组的远距离 Mimivirus 相关,突出了 Megaviridae 的基本特征。
Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):17486-91. doi: 10.1073/pnas.1110889108. Epub 2011 Oct 10.