Aherfi Sarah, Pagnier Isabelle, Fournous Ghislain, Raoult Didier, La Scola Bernard, Colson Philippe
Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63 CNRS 7278 IRD 198 INSERM U1095, Facultés de Médecine et de Pharmacie, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 05, France.
Virus Genes. 2013 Dec;47(3):550-5. doi: 10.1007/s11262-013-0965-4. Epub 2013 Aug 4.
Marseillevirus is a giant virus that was isolated in 2007 by culturing water collected from a cooling tower in Paris, France, on Acanthamoeba polyphaga. Since then, five other marseilleviruses have been detected in environmental or human samples. The genomes of two of the six marseilleviruses have been described in detail. We describe herein the genome of Cannes 8 virus, a new member of the proposed family "Marseilleviridae." Cannes 8 virus was isolated from water collected from a cooling tower in Cannes in southeastern France. Its genome is a circular double-stranded DNA molecule with 374,041 base pairs, larger than the Marseillevirus and Lausannevirus genomes. This genome harbors 484 open reading frames predicted to encode proteins with sizes ranging from 50 to 1,537 amino acids, among which 380 (79%) and 272 (56%) are bona fide orthologs of Marseillevirus and Lausannevirus proteins, respectively. In addition, 407 and 336 predicted proteins have significant hits against Marseillevirus and Lausannevirus proteins, respectively, and 294 proteins are shared by all three marseilleviruses. The Cannes 8 virus genome has a high level of collinearity (for 96% of orthologs) with the Marseillevirus genome. About two-thirds of the Cannes 8 virus gene repertoire is composed of family ORFans. The description and annotation of the genomes of new marseilleviruses that will undoubtedly be recovered from environmental or clinical samples will be helpful to increase our knowledge of the pan-genome of the family "Marseilleviridae."
马赛病毒是一种巨型病毒,于2007年通过在法国巴黎一座冷却塔采集的水样中培养多食棘阿米巴而分离得到。自那时起,在环境样本或人类样本中又检测到另外五种马赛病毒。已详细描述了六种马赛病毒中两种的基因组。我们在此描述戛纳8病毒的基因组,它是拟议的“马赛病毒科”的一个新成员。戛纳8病毒是从法国东南部戛纳一座冷却塔采集的水样中分离得到的。其基因组是一个含有374,041个碱基对的环状双链DNA分子,比马赛病毒和洛桑病毒的基因组更大。该基因组包含484个开放阅读框,预计编码大小从50到1537个氨基酸的蛋白质,其中分别有380个(79%)和272个(56%)是马赛病毒和洛桑病毒蛋白质的真正直系同源物。此外,分别有407个和336个预测蛋白质与马赛病毒和洛桑病毒的蛋白质有显著匹配,并且有294个蛋白质为所有三种马赛病毒所共有。戛纳8病毒基因组与马赛病毒基因组具有高度的共线性(96%的直系同源物)。戛纳8病毒约三分之二的基因库由家族孤儿基因组成。对无疑将从环境或临床样本中发现的新马赛病毒基因组的描述和注释,将有助于增加我们对“马赛病毒科”泛基因组的了解。