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分子建模研究提示存在对称的 hβ₂R-Gαβγ-同二聚体。

Molecular modeling studies give hint for the existence of a symmetric hβ₂R-Gαβγ-homodimer.

机构信息

Department of Pharmaceutical and Medicinal Chemistry II, Faculty of Chemistry and Pharmacy, University of Regensburg, Universitätsstraße 31, 93040, Regensburg, Germany,

出版信息

J Mol Model. 2013 Oct;19(10):4443-57. doi: 10.1007/s00894-013-1923-8. Epub 2013 Aug 8.

DOI:10.1007/s00894-013-1923-8
PMID:23925512
Abstract

Several experimental studies suggest that GPCR dimers or oligomers may play an important role in signal transduction. In 2011 the crystal structure of a hβ2R-Gαβγ-complex was published and crystal structures of GPCR dimers are known. But until now, no crystal structure of a GPCR dimer including the Gαβγ-complex is available. In order to obtain detailed insights into interactions within hβ2R dimers including the Gαβγ-complex we performed a potential-energy-surface scan in order to identify favored asymmetric and symmetric hβ2R-Gαβγ-homodimers. This potential energy surface scan suggests, besides the existence of asymmetric dimers, the existence of a symmetric hβ2R-Gαβγ-homodimer with a TM I/VII-contact. A subsequent 20 ns MD simulation of the symmetric homodimer revealed large asymmetric conformational changes of both hβ2Rs, especially regarding TM VII and the interaction network between Asp(2.50), Val(7.44), Ser(7.46) and Tyr(7.43). Since similar conformational changes were not observed during the molecular dynamic simulation of the monomeric hβ2R-Gαβγ-complex, it may be suggested that the conformational changes in the symmetric homodimer are related to the presence of the second hβ2R-Gαβγ-complex. Due to the limitations of simulation time, conformational changes within a time scale of μs or ms may of course not be observed. However, the detected conformational changes, especially in TM VII, correspond to minima on the potential energy surface and thus, this study gives new insights into GPCR dimers on molecular level and furthermore, gives suggestions for site-directed mutagenesis studies.

摘要

几项实验研究表明,G 蛋白偶联受体(GPCR)二聚体或寡聚体可能在信号转导中发挥重要作用。2011 年,发表了 hβ2R-Gαβγ 复合物的晶体结构,并且已经知道 GPCR 二聚体的晶体结构。但到目前为止,还没有包括 Gαβγ 复合物在内的 GPCR 二聚体的晶体结构。为了深入了解 hβ2R 二聚体(包括 Gαβγ 复合物)内的相互作用,我们进行了势能表面扫描,以确定有利的不对称和对称 hβ2R-Gαβγ-同源二聚体。该势能表面扫描表明,除了不对称二聚体的存在外,还存在一个对称的 hβ2R-Gαβγ-同源二聚体,其 TM I/VII 接触。随后对对称同源二聚体进行了 20 ns 的 MD 模拟,结果显示两个 hβ2R 都发生了较大的不对称构象变化,特别是 TM VII 和 Asp(2.50)、Val(7.44)、Ser(7.46)和 Tyr(7.43)之间的相互作用网络。由于在单体 hβ2R-Gαβγ 复合物的分子动力学模拟中没有观察到类似的构象变化,因此可以认为对称同源二聚体中的构象变化与第二个 hβ2R-Gαβγ 复合物的存在有关。由于模拟时间的限制,当然不可能观察到μs 或 ms 时间尺度内的构象变化。然而,所检测到的构象变化,特别是在 TM VII 中,与势能表面上的最小值相对应,因此,这项研究在分子水平上为 GPCR 二聚体提供了新的见解,并且为定点突变研究提供了建议。

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