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评估 G 蛋白偶联受体中二聚体界面的相对稳定性。

Assessing the relative stability of dimer interfaces in g protein-coupled receptors.

机构信息

Department of Structural and Chemical Biology, Mount Sinai School of Medicine, New York, New York, United States of America.

出版信息

PLoS Comput Biol. 2012;8(8):e1002649. doi: 10.1371/journal.pcbi.1002649. Epub 2012 Aug 16.

Abstract

Considerable evidence has accumulated in recent years suggesting that G protein-coupled receptors (GPCRs) associate in the plasma membrane to form homo- and/or heteromers. Nevertheless, the stoichiometry, fraction and lifetime of such receptor complexes in living cells remain topics of intense debate. Motivated by experimental data suggesting differing stabilities for homomers of the cognate human β1- and β2-adrenergic receptors, we have carried out approximately 160 microseconds of biased molecular dynamics simulations to calculate the dimerization free energy of crystal structure-based models of these receptors, interacting at two interfaces that have often been implicated in GPCR association under physiological conditions. Specifically, results are presented for simulations of coarse-grained (MARTINI-based) and atomistic representations of each receptor, in homodimeric configurations with either transmembrane helices TM1/H8 or TM4/3 at the interface, in an explicit lipid bilayer. Our results support a definite contribution to the relative stability of GPCR dimers from both interface sequence and configuration. We conclude that β1- and β2-adrenergic receptor homodimers with TM1/H8 at the interface are more stable than those involving TM4/3, and that this might be reconciled with experimental studies by considering a model of oligomerization in which more stable TM1 homodimers diffuse through the membrane, transiently interacting with other protomers at interfaces involving other TM helices.

摘要

近年来,大量证据表明 G 蛋白偶联受体(GPCR)在质膜中相互作用形成同源和/或异源二聚体。然而,活细胞中这种受体复合物的计量、分数和寿命仍然是激烈争论的话题。受实验数据的启发,这些数据表明同源人β1-和β2-肾上腺素能受体的同源二聚体具有不同的稳定性,我们进行了大约 160 微秒的有偏分子动力学模拟,以计算这些受体的晶体结构模型的二聚化自由能,这些模型在两个界面上相互作用,这两个界面经常被认为在生理条件下与 GPCR 相关。具体来说,本文呈现了两种受体的粗粒度(基于 MARTINI)和原子表示的模拟结果,在同型二聚体构象中,界面处存在 TM1/H8 或 TM4/3 跨膜螺旋,在明确的脂质双层中。我们的结果支持界面序列和构象对 GPCR 二聚体相对稳定性的明确贡献。我们得出结论,具有 TM1/H8 界面的β1-和β2-肾上腺素能受体同源二聚体比涉及 TM4/3 的二聚体更稳定,并且通过考虑更稳定的 TM1 同源二聚体通过膜扩散的寡聚化模型,可以与实验研究相协调,与其他 TM 螺旋涉及的其他原聚体瞬时相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97df/3420924/c7fed6cec524/pcbi.1002649.g001.jpg

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