Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA 93106, USA.
Mol Phylogenet Evol. 2013 Dec;69(3):514-23. doi: 10.1016/j.ympev.2013.07.026. Epub 2013 Aug 7.
Multiple rounds of whole genome duplication have repeatedly marked the evolution of vertebrates, and correlate strongly with morphological innovation. However, less is known about the behavioral, physiological and ecological consequences of genome duplication, and whether these events coincide with major transitions in vertebrate complexity. The complex behavior of anadromy - where adult fishes migrate up rivers from the sea to their natal site to spawn - is well known in salmonid fishes. Some hypotheses suggest that migratory behavior evolved as a consequence of an ancestral genome duplication event, which permitted salinity tolerance and osmoregulatory plasticity. Here we test whether anadromy evolved multiple times within salmonids, and whether genome duplication coincided with the evolution of anadromy. We present a method that uses ancestral character simulation data to plot the frequency of character transitions over a time calibrated phylogenetic tree to provide estimates of the absolute timing of character state transitions. Furthermore, we incorporate extinct and extant taxa to improve on previous estimates of divergence times. We present the first phylogenetic evidence indicating that anadromy evolved at least twice from freshwater salmonid ancestors. Results suggest that genome duplication did not coincide in time with changes in migratory behavior, but preceded a transition to anadromy by 55-50 million years. Our study represents the first attempt to estimate the absolute timing of a complex behavioral trait in relation to a genome duplication event.
多次全基因组复制事件反复标记了脊椎动物的进化,并与形态创新密切相关。然而,关于基因组复制的行为、生理和生态后果,以及这些事件是否与脊椎动物复杂性的主要转变同时发生,我们知之甚少。溯河洄游行为——成年鱼类从海洋洄游到河流上游到其出生地产卵——在鲑鱼中是众所周知的。一些假说表明,洄游行为是由于祖先的基因组复制事件进化而来的,这种事件允许盐度耐受性和渗透调节可塑性。在这里,我们测试了鲑鱼中是否多次发生了溯河洄游行为,以及基因组复制是否与溯河洄游的进化同时发生。我们提出了一种使用祖先特征模拟数据的方法,在时间校准的系统发育树上绘制特征转变的频率,以提供特征状态转变的绝对时间估计。此外,我们还整合了已灭绝和现存的分类单元,以改进先前的分歧时间估计。我们提出了第一个表明溯河洄游行为至少从淡水鲑鱼祖先进化而来的系统发育证据。结果表明,基因组复制的时间与迁徙行为的变化不一致,但在向溯河洄游转变之前,已经提前了 55-5000 万年。我们的研究代表了首次尝试估计与基因组复制事件相关的复杂行为特征的绝对时间。