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一种基于自我中心数据估计家庭内部接触网络的惩罚似然方法。

A penalized likelihood approach to estimate within-household contact networks from egocentric data.

作者信息

Potter Gail E, Hens Niel

机构信息

California Polytechnic State University, San Luis Obispo, CA, U.S.A., Center for Statistics and Quantitative Infectious Diseases, Fred Hutchinson Cancer Research Center, Seattle, WA, U.S.A.

出版信息

J R Stat Soc Ser C Appl Stat. 2013 Aug 1;62(4):629-648. doi: 10.1111/rssc.12011.

DOI:10.1111/rssc.12011
PMID:23935218
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3736605/
Abstract

Acute infectious diseases are transmitted over networks of social contacts. Epidemic models are used to predict the spread of emergent pathogens and compare intervention strategies. Many of these models assume equal probability of contact within mixing groups (homes, schools, etc.), but little work has inferred the actual contact network, which may influence epidemic estimates. We develop a penalized likelihood method to infer contact networks within households, a key area for disease transmission. Using egocentric surveys of contact behavior in Belgium, we estimate within-household contact networks for six different age compositions. Our estimates show dependency in contact behavior and vary substantively by age composition, with fewer contacts occurring in older households. Our results are relevant for epidemic models used to make policy recommendations.

摘要

急性传染病通过社会接触网络传播。流行病模型用于预测新出现病原体的传播并比较干预策略。这些模型中的许多都假设在混合群体(家庭、学校等)内接触的概率相等,但很少有研究推断实际的接触网络,而这可能会影响疫情估计。我们开发了一种惩罚似然方法来推断家庭内部的接触网络,这是疾病传播的一个关键领域。利用对比利时接触行为的自我中心调查,我们估计了六种不同年龄构成家庭内部的接触网络。我们的估计结果显示了接触行为中的依赖性,并且因年龄构成而有很大差异,老年家庭中的接触较少。我们的结果对于用于制定政策建议的流行病模型具有参考价值。

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引用本文的文献

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Household members do not contact each other at random: implications for infectious disease modelling.家庭成员之间不会随机接触:对传染病建模的启示。
Proc Biol Sci. 2018 Dec 19;285(1893):20182201. doi: 10.1098/rspb.2018.2201.
2
Modeling workplace contact networks: The effects of organizational structure, architecture, and reporting errors on epidemic predictions.模拟工作场所接触网络:组织结构、建筑结构和报告错误对疫情预测的影响。
Netw Sci (Camb Univ Press). 2015 Sep 1;3(3):298-325. doi: 10.1017/nws.2015.22. Epub 2015 Jul 31.
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PLoS One. 2015 Mar 3;10(3):e0118457. doi: 10.1371/journal.pone.0118457. eCollection 2015.

本文引用的文献

1
MODELING SOCIAL NETWORKS FROM SAMPLED DATA.从抽样数据构建社交网络模型。
Ann Appl Stat. 2010;4(1):5-25. doi: 10.1214/08-AOAS221.
2
ESTIMATING WITHIN-HOUSEHOLD CONTACT NETWORKS FROM EGOCENTRIC DATA.根据自我中心数据估计家庭内部接触网络
Ann Appl Stat. 2011;5(3):1816-1838. doi: 10.1214/11-aoas474.
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Model structure analysis to estimate basic immunological processes and maternal risk for parvovirus B19.模型结构分析估计细小病毒 B19 的基本免疫过程和母体风险。
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Mining social mixing patterns for infectious disease models based on a two-day population survey in Belgium.基于比利时为期两天的人口调查挖掘传染病模型的社会混合模式。
BMC Infect Dis. 2009 Jan 20;9:5. doi: 10.1186/1471-2334-9-5.
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Penalized likelihood phylogenetic inference: bridging the parsimony-likelihood gap.惩罚似然法系统发育推断:弥合简约法与似然法之间的差距。
Syst Biol. 2008 Oct;57(5):665-74. doi: 10.1080/10635150802422274.
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A Data-Augmentation Method for Infectious Disease Incidence Data from Close Contact Groups.一种针对密切接触群体传染病发病率数据的数据增强方法。
Comput Stat Data Anal. 2007 Aug 15;51(12):6582-6595. doi: 10.1016/j.csda.2007.03.007.
10
Social contacts and mixing patterns relevant to the spread of infectious diseases.与传染病传播相关的社交接触和混合模式。
PLoS Med. 2008 Mar 25;5(3):e74. doi: 10.1371/journal.pmed.0050074.