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检测细菌 III 型分泌系统组件与克氏锥虫表面蛋白之间的边缘序列相似性:水平基因转移还是趋同进化?

Examining marginal sequence similarities between bacterial type III secretion system components and Trypanosoma cruzi surface proteins: horizontal gene transfer or convergent evolution?

机构信息

Departamento de Microbiologia, Imunologia e Parasitologia, Universidade Federal de São Paulo São Paulo, Brazil ; Laboratório de Genômica Evolutiva e Biocomplexidade, Universidade Federal de São Paulo São Paulo, Brazil.

出版信息

Front Genet. 2013 Aug 16;4:143. doi: 10.3389/fgene.2013.00143. eCollection 2013.

Abstract

The cell invasion mechanism of Trypanosoma cruzi has similarities with some intracellular bacterial taxa especially regarding calcium mobilization. This mechanism is not observed in other trypanosomatids, suggesting that the molecules involved in this type of cell invasion were a product of (1) acquisition by horizontal gene transfer (HGT); (2) secondary loss in the other trypanosomatid lineages of the mechanism inherited since the bifurcation Bacteria-Neomura (1.9 billion to 900 million years ago); or (3) de novo evolution from non-homologous proteins via convergent evolution. Similar to T. cruzi, several bacterial genera require increased host cell cytosolic calcium for intracellular invasion. Among intracellular bacteria, the mechanism of host cell invasion of genus Salmonella is the most similar to T. cruzi. The invasion of Salmonella occurs by contact with the host's cell surface and is mediated by the type III secretion system (T3SS) that promotes the contact-dependent translocation of effector proteins directly into host's cell cytoplasm. Here we provide evidence of distant sequence similarities and structurally conserved domains between T. cruzi and Salmonella spp T3SS proteins. Exhaustive database searches were directed to a wide range of intracellular bacteria and trypanosomatids, exploring sequence patterns for comparison of structural similarities and Bayesian phylogenies. Based on our data we hypothesize that T. cruzi acquired genes for calcium mobilization mediated invasion by ancient HGT from ancestral Salmonella lineages.

摘要

克氏锥虫的细胞入侵机制与一些细胞内细菌分类群具有相似性,特别是在钙动员方面。这种机制在其他原生动物中是观察不到的,这表明参与这种细胞入侵的分子是(1)通过水平基因转移(HGT)获得的;(2)在细菌与新门(19 亿至 9 亿年前)分叉以来,该机制在其他原生动物谱系中发生的二次丢失;或(3)通过趋同进化从非同源蛋白从头进化而来。与 T. cruzi 相似,一些细菌属需要增加宿主细胞胞质溶胶中的钙才能进行细胞内入侵。在细胞内细菌中,沙门氏菌属的宿主细胞入侵机制与 T. cruzi 最为相似。沙门氏菌的入侵是通过与宿主细胞表面接触而发生的,并由 III 型分泌系统(T3SS)介导,该系统促进效应蛋白直接接触依赖性地转移到宿主细胞的细胞质中。在这里,我们提供了 T. cruzi 和沙门氏菌属 T3SS 蛋白之间存在远距离序列相似性和结构保守结构域的证据。广泛的数据库搜索针对广泛的细胞内细菌和原生动物进行,探索序列模式以比较结构相似性和贝叶斯系统发育。根据我们的数据,我们假设 T. cruzi 通过古老的 HGT 从祖先的沙门氏菌谱系中获得了介导钙动员的入侵基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0d3/3744899/777b93f5e791/fgene-04-00143-g0001.jpg

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