嗜酸乳杆菌五株菌株的基因组序列草图，包括从人类分离得到的CIP 76.13T菌株、从乳制品中分离得到的CIRM - BIA 442和CIRM - BIA 445菌株，以及来源不明的DSM 20242和DSM 9126菌株。
Draft Genome Sequences of Five Strains of Lactobacillus acidophilus, Strain CIP 76.13T, Isolated from Humans, Strains CIRM-BIA 442 and CIRM-BIA 445, Isolated from Dairy Products, and Strains DSM 20242 and DSM 9126 of Unknown Origin.
作者信息
Falentin Hélène, Cousin Sylvie, Clermont Dominique, Creno Sophie, Ma Laurence, Chuat Victoria, Loux Valentin, Rüdiger Pukall, Bizet Chantal, Bouchier Christiane
机构信息
INRA, UMR1253 Science et Technologie du Lait et de l'OEuf, Rennes, France.
出版信息
Genome Announc. 2013 Aug 22;1(4):e00658-13. doi: 10.1128/genomeA.00658-13.
Abstract
Lactobacillus acidophilus is a natural inhabitant of mammalian gastrointestinal systems and is used in dairy and pharmaceutical products. Five draft genome sequences, covering 1,995,790 nucleotides (nt) on average, are divided into 19 to 34 scaffolds covering 1,995 to 2,053 genes. The draft genome sequences were compared to the sequence of the L. acidophilus NCFM dairy strain.
摘要
嗜酸乳杆菌是哺乳动物胃肠道系统的天然栖息菌，用于乳制品和药品中。五个草图基因组序列平均覆盖1,995,790个核苷酸（nt），分为19至34个支架，涵盖1,995至2,053个基因。将这些草图基因组序列与嗜酸乳杆菌NCFM乳制品菌株的序列进行了比较。
相似文献
1
Draft Genome Sequences of Five Strains of Lactobacillus acidophilus, Strain CIP 76.13T, Isolated from Humans, Strains CIRM-BIA 442 and CIRM-BIA 445, Isolated from Dairy Products, and Strains DSM 20242 and DSM 9126 of Unknown Origin.嗜酸乳杆菌五株菌株的基因组序列草图，包括从人类分离得到的CIP 76.13T菌株、从乳制品中分离得到的CIRM - BIA 442和CIRM - BIA 445菌株，以及来源不明的DSM 20242和DSM 9126菌株。
Genome Announc. 2013 Aug 22;1(4):e00658-13. doi: 10.1128/genomeA.00658-13.
2
Analysis of Lactobacillus phages and bacteriocins in American dairy products and characterization of a phage isolated from yogurt.美国乳制品中乳酸杆菌噬菌体和细菌素的分析以及从酸奶中分离出的一种噬菌体的特性研究。
Appl Environ Microbiol. 1996 Jun;62(6):2111-6. doi: 10.1128/aem.62.6.2111-2116.1996.
3
Transcriptome of Lactobacillus acidophilus and Colonization Impact on Murine Host Intestinal Gene Expression.嗜酸乳杆菌转录组及其对小鼠宿主肠道基因表达的定植影响。
mBio. 2021 Jan 26;12(1):e03399-20. doi: 10.1128/mBio.03399-20.
4
Draft Genome Sequences of Lactobacillus equicursoris CIP 110162T and Lactobacillus sp. Strain CRBIP 24.137, Isolated from Thoroughbred Racehorse Feces and Human Urine, Respectively.分别从纯种赛马粪便和人类尿液中分离得到的马源乳杆菌CIP 110162T和乳杆菌属菌株CRBIP 24.137的基因组序列草图
Genome Announc. 2013 Aug 22;1(4):e00663-13. doi: 10.1128/genomeA.00663-13.
5
Invited review: the scientific basis of Lactobacillus acidophilus NCFM functionality as a probiotic.特邀综述：嗜酸乳杆菌NCFM作为益生菌发挥功能的科学依据。
J Dairy Sci. 2001 Feb;84(2):319-31. doi: 10.3168/jds.S0022-0302(01)74481-5.
6
Draft Genome Sequence of the Probiotic Strain Lactobacillus acidophilus ATCC 4356.益生菌嗜酸乳杆菌ATCC 4356的基因组序列草图
Genome Announc. 2015 Jan 15;3(1):e01421-14. doi: 10.1128/genomeA.01421-14.
7
The Adsorption Ability of NCFM to Benzo(a)pyrene in PM.嗜热栖热放线菌NCFM对可吸入颗粒物中苯并（a）芘的吸附能力
J Toxicol. 2021 Jan 7;2021:6290524. doi: 10.1155/2021/6290524. eCollection 2021.
8
Effects of yogurt starter cultures on the survival of Lactobacillus acidophilus.酸奶发酵剂对嗜酸乳杆菌存活率的影响。
Int J Food Microbiol. 2011 Jan 31;145(1):169-75. doi: 10.1016/j.ijfoodmicro.2010.12.006. Epub 2010 Dec 13.
9
Bacteriocin involved in premature death of Lactobacillus acidophilus NCFM during growth at pH 6.在pH 6条件下生长期间，细菌素参与嗜酸乳杆菌NCFM的过早死亡。
J Dairy Sci. 1988 Feb;71(2):306-15. doi: 10.3168/jds.S0022-0302(88)79559-4.
10
Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20).益生菌费氏丙酸杆菌CIRM-BIA 129（ITG P20）的永久基因组草图序列
Stand Genomic Sci. 2016 Jan 14;11:6. doi: 10.1186/s40793-015-0120-z. eCollection 2016.
引用本文的文献
1
Complete genome sequencing and comparative genomic analysis of C5 as a potential canine probiotics.将C5作为潜在犬用益生菌的全基因组测序及比较基因组分析
J Anim Sci Technol. 2021 Nov;63(6):1411-1422. doi: 10.5187/jast.2021.e126. Epub 2021 Nov 30.
2
Complete Genome Sequence of Lactobacillus acidophilus FSI4, Isolated from Yogurt.从酸奶中分离得到的嗜酸乳杆菌FSI4的全基因组序列
Genome Announc. 2015 Apr 9;3(2):e00166-15. doi: 10.1128/genomeA.00166-15.
3
The domestication of the probiotic bacterium Lactobacillus acidophilus.益生菌嗜酸乳杆菌的驯化
Sci Rep. 2014 Nov 26;4:7202. doi: 10.1038/srep07202.
本文引用的文献
1
ABySS: a parallel assembler for short read sequence data.ABySS：一种用于短读长序列数据的并行汇编器。
Genome Res. 2009 Jun;19(6):1117-23. doi: 10.1101/gr.089532.108. Epub 2009 Feb 27.
2
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
3
AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system.AGMIAL：作为分布式系统为原核生物基因组实施注释策略。
Nucleic Acids Res. 2006 Jul 19;34(12):3533-45. doi: 10.1093/nar/gkl471. Print 2006.
4
Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM.益生菌嗜酸乳杆菌NCFM的全基因组序列
Proc Natl Acad Sci U S A. 2005 Mar 15;102(11):3906-12. doi: 10.1073/pnas.0409188102. Epub 2005 Jan 25.
5
Versatile and open software for comparing large genomes.用于比较大型基因组的通用且开放的软件。
Genome Biol. 2004;5(2):R12. doi: 10.1186/gb-2004-5-2-r12. Epub 2004 Jan 30.
Zotero 插件