Institute of Pesticide Science, Hunan Agricultural University, Changsha 410128, China.
Int J Biol Sci. 2013 Aug 20;9(8):792-802. doi: 10.7150/ijbs.5862. eCollection 2013.
Quantitative real-time PCR (qRT-PCR), a primary tool in gene expression analysis, requires an appropriate normalization strategy to control for variation among samples. The best option is to compare the mRNA level of a target gene with that of reference gene(s) whose expression level is stable across various experimental conditions. In this study, expression profiles of eight candidate reference genes from the diamondback moth, Plutella xylostella, were evaluated under diverse experimental conditions. RefFinder, a web-based analysis tool, integrates four major computational programs including geNorm, Normfinder, BestKeeper, and the comparative ΔCt method to comprehensively rank the tested candidate genes. Elongation factor 1 (EF1) was the most suited reference gene for the biotic factors (development stage, tissue, and strain). In contrast, although appropriate reference gene(s) do exist for several abiotic factors (temperature, photoperiod, insecticide, and mechanical injury), we were not able to identify a single universal reference gene. Nevertheless, a suite of candidate reference genes were specifically recommended for selected experimental conditions. Our finding is the first step toward establishing a standardized qRT-PCR analysis of this agriculturally important insect pest.
实时荧光定量 PCR(qRT-PCR)是基因表达分析的主要工具,需要适当的标准化策略来控制样品间的差异。最佳选择是将目标基因的 mRNA 水平与在各种实验条件下表达水平稳定的参考基因(s)进行比较。在这项研究中,评估了小菜蛾 Plutella xylostella 中的 8 个候选参考基因在不同实验条件下的表达谱。RefFinder 是一个基于网络的分析工具,整合了包括 geNorm、Normfinder、BestKeeper 和比较 ΔCt 方法在内的四个主要计算程序,以全面评估测试候选基因。延伸因子 1(EF1)是生物因素(发育阶段、组织和菌株)最适合的参考基因。相比之下,尽管存在几种非生物因素(温度、光周期、杀虫剂和机械损伤)的适当参考基因,但我们无法确定单个通用参考基因。然而,我们为选定的实验条件推荐了一套候选参考基因。我们的发现是建立这种农业上重要害虫的标准化 qRT-PCR 分析的第一步。