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使用 poly(A) 陷阱对细胞中刺激诱导的多聚腺苷酸化进行全球分析。

Global profiling of stimulus-induced polyadenylation in cells using a poly(A) trap.

机构信息

Department of Pharmacology, Weill Medical College, Cornell University, New York, New York, USA.

出版信息

Nat Chem Biol. 2013 Nov;9(11):671-3. doi: 10.1038/nchembio.1334. Epub 2013 Sep 1.

DOI:10.1038/nchembio.1334
PMID:23995769
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3805764/
Abstract

Polyadenylation of mRNA leads to increased protein expression in response to diverse stimuli, but it is difficult to identify mRNAs that become polyadenylated in living cells. Here we describe a click chemistry-compatible nucleoside analog that is selectively incorporated into poly(A) tails of transcripts in cells. Next-generation sequencing of labeled mRNAs enables a transcriptome-wide profile of polyadenylation and provides insights into the mRNA sequence elements that are correlated with polyadenylation.

摘要

mRNA 的多聚腺苷酸化会导致蛋白质表达增加,以响应各种刺激,但很难确定在活细胞中发生多聚腺苷酸化的 mRNA。在这里,我们描述了一种可与点击化学兼容的核苷类似物,它可被选择性地掺入细胞中转录物的多(A)尾巴中。标记的 mRNA 的下一代测序可提供全转录组范围内的多聚腺苷酸化谱,并深入了解与多聚腺苷酸化相关的 mRNA 序列元件。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9633/3805764/4a177111ea7b/nihms512976f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9633/3805764/783aeed79176/nihms512976f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9633/3805764/0feb27c98276/nihms512976f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9633/3805764/4a177111ea7b/nihms512976f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9633/3805764/783aeed79176/nihms512976f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9633/3805764/0feb27c98276/nihms512976f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9633/3805764/4a177111ea7b/nihms512976f3.jpg

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