Suppr超能文献

下一代蛋白设计。

NextGen protein design.

机构信息

Department of Molecular Biophysics and Biochemistry, Yale University, 266 Whitney Avenue, New Haven, CT 06511, U.S.A.

Integrated Graduate Program in Physical and Engineering Biology, Yale University, 266 Whitney Avenue, New Haven, CT 06511, U.S.A.

出版信息

Biochem Soc Trans. 2013 Oct;41(5):1131-1136. doi: 10.1042/BST20130112.

Abstract

Protein engineering is at an exciting stage because designed protein-protein interactions are being used in many applications. For instance, three designed proteins are now in clinical trials. Although there have been many successes over the last decade, protein engineering still faces numerous challenges. Often, designs do not work as anticipated and they still require substantial redesign. The present review focuses on the successes, the challenges and the limitations of rational protein design today.

摘要

蛋白质工程正处于令人兴奋的阶段,因为设计的蛋白质-蛋白质相互作用正在许多应用中得到应用。例如,现在有三种设计的蛋白质正在临床试验中。尽管在过去的十年中有许多成功,但蛋白质工程仍然面临许多挑战。通常,设计不能按预期工作,它们仍然需要大量的重新设计。本综述重点介绍了理性蛋白质设计的今天的成功、挑战和局限性。

相似文献

1
NextGen protein design.
Biochem Soc Trans. 2013 Oct;41(5):1131-1136. doi: 10.1042/BST20130112.
3
Computational protein design-the next generation tool to expand synthetic biology applications.
Curr Opin Biotechnol. 2018 Aug;52:145-152. doi: 10.1016/j.copbio.2018.04.001. Epub 2018 May 2.
4
Computational protein design with backbone plasticity.
Biochem Soc Trans. 2016 Oct 15;44(5):1523-1529. doi: 10.1042/BST20160155. Epub 2016 Oct 19.
5
Progress in computational protein design.
Curr Opin Biotechnol. 2007 Aug;18(4):305-11. doi: 10.1016/j.copbio.2007.04.009. Epub 2007 Jul 20.
6
Advances in computational protein design.
Curr Opin Struct Biol. 2004 Aug;14(4):487-94. doi: 10.1016/j.sbi.2004.06.002.
7
Engineering repeat proteins of the immune system.
Biopolymers. 2020 Apr;111(4):e23348. doi: 10.1002/bip.23348. Epub 2020 Feb 7.
8
Computational design of protein-ligand interfaces: potential in therapeutic development.
Trends Biotechnol. 2011 Apr;29(4):159-66. doi: 10.1016/j.tibtech.2011.01.002. Epub 2011 Feb 4.
9
Size and structure of the sequence space of repeat proteins.
PLoS Comput Biol. 2019 Aug 15;15(8):e1007282. doi: 10.1371/journal.pcbi.1007282. eCollection 2019 Aug.
10
Minireview: applied structural bioinformatics in proteomics.
Protein J. 2013 Oct;32(7):505-11. doi: 10.1007/s10930-013-9514-1.

引用本文的文献

2
PyFolding: Open-Source Graphing, Simulation, and Analysis of the Biophysical Properties of Proteins.
Biophys J. 2018 Feb 6;114(3):516-521. doi: 10.1016/j.bpj.2017.11.3779.
3
Purification and assembly of thermostable Cy5 labeled γ-PNAs into a 3D DNA nanocage.
Artif DNA PNA XNA. 2014 Dec 15;5(3):e992181. doi: 10.4161/1949095X.2014.992181.
4
CODV-Ig, a universal bispecific tetravalent and multifunctional immunoglobulin format for medical applications.
MAbs. 2016 Jul;8(5):867-78. doi: 10.1080/19420862.2016.1162932. Epub 2016 Mar 16.
5
A designed repeat protein as an affinity capture reagent.
Biochem Soc Trans. 2015 Oct;43(5):874-80. doi: 10.1042/BST20150091.

本文引用的文献

1
All repeats are not equal: a module-based approach to guide repeat protein design.
J Mol Biol. 2013 May 27;425(10):1826-1838. doi: 10.1016/j.jmb.2013.02.013. Epub 2013 Feb 19.
3
Treatment of diabetic macular edema with a designed ankyrin repeat protein that binds vascular endothelial growth factor: a phase I/II study.
Am J Ophthalmol. 2013 Apr;155(4):697-704, 704.e1-2. doi: 10.1016/j.ajo.2012.09.032. Epub 2012 Dec 4.
4
Designed Armadillo repeat proteins: library generation, characterization and selection of peptide binders with high specificity.
J Mol Biol. 2012 Nov 23;424(1-2):68-87. doi: 10.1016/j.jmb.2012.08.029. Epub 2012 Sep 14.
6
A modular approach to the design of protein-based smart gels.
Biopolymers. 2012 Jul;97(7):508-17. doi: 10.1002/bip.22033. Epub 2012 Feb 10.
7
Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering.
Proc Natl Acad Sci U S A. 2012 Feb 28;109(9):3299-304. doi: 10.1073/pnas.1113193109. Epub 2012 Feb 10.
8
Teaching an old scaffold new tricks: monobodies constructed using alternative surfaces of the FN3 scaffold.
J Mol Biol. 2012 Jan 13;415(2):393-405. doi: 10.1016/j.jmb.2011.12.019. Epub 2011 Dec 16.
9
68Ga-DOTA-affibody molecule for in vivo assessment of HER2/neu expression with PET.
Eur J Nucl Med Mol Imaging. 2011 Nov;38(11):1967-76. doi: 10.1007/s00259-011-1810-4. Epub 2011 Apr 20.
10
Phase I and pharmacokinetic study of CT-322 (BMS-844203), a targeted Adnectin inhibitor of VEGFR-2 based on a domain of human fibronectin.
Clin Cancer Res. 2011 Jan 15;17(2):363-71. doi: 10.1158/1078-0432.CCR-10-1411. Epub 2011 Jan 11.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验