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Transposon-mediated targeted and specific knockdown of maternally expressed transcripts in the ascidian Ciona intestinalis.转座子介导的对海鞘文昌鱼中母源表达转录本的靶向和特异性敲低。
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本文引用的文献

1
PIWI-interacting RNAs: from generation to transgenerational epigenetics.PIWI 相互作用 RNA:从生成到跨代表观遗传学。
Nat Rev Genet. 2013 Aug;14(8):523-34. doi: 10.1038/nrg3495. Epub 2013 Jun 25.
2
A major epigenetic programming mechanism guided by piRNAs.一种由 piRNAs 指导的主要表观遗传编程机制。
Dev Cell. 2013 Mar 11;24(5):502-16. doi: 10.1016/j.devcel.2013.01.023. Epub 2013 Feb 21.
3
Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state.Piwi 诱导 piRNA 引导的转录沉默和抑制性染色质状态的建立。
Genes Dev. 2013 Feb 15;27(4):390-9. doi: 10.1101/gad.209841.112. Epub 2013 Feb 7.
4
The piRNA pathway in flies: highlights and future directions.果蝇中的 piRNA 通路:要点与未来方向。
Curr Opin Genet Dev. 2013 Feb;23(1):44-52. doi: 10.1016/j.gde.2012.12.003. Epub 2013 Jan 11.
5
CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors.CapSeq 和 CIP-TAP 鉴定 Pol II 起始位点,并揭示了带有帽子的小 RNA 作为 C. elegans piRNA 的前体。
Cell. 2012 Dec 21;151(7):1488-500. doi: 10.1016/j.cell.2012.11.023.
6
Transcriptional silencing of transposons by Piwi and maelstrom and its impact on chromatin state and gene expression.Piwi 和 maelstrom 通过转录沉默转座子及其对染色质状态和基因表达的影响。
Cell. 2012 Nov 21;151(5):964-80. doi: 10.1016/j.cell.2012.10.040. Epub 2012 Nov 15.
7
Biology of PIWI-interacting RNAs: new insights into biogenesis and function inside and outside of germlines.PIWI 相互作用 RNA 的生物学:生殖细胞内外的生物发生和功能的新见解。
Genes Dev. 2012 Nov 1;26(21):2361-73. doi: 10.1101/gad.203786.112.
8
Structure and function of Zucchini endoribonuclease in piRNA biogenesis.Zucchini 内切核糖核酸酶在 piRNA 生物发生中的结构与功能。
Nature. 2012 Nov 8;491(7423):284-7. doi: 10.1038/nature11509. Epub 2012 Oct 14.
9
The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis.西葫芦的结构生物化学表明它是 piRNA 生物发生中的一种核酸内切酶。
Nature. 2012 Nov 8;491(7423):279-83. doi: 10.1038/nature11502. Epub 2012 Oct 14.
10
Paramutation in Drosophila linked to emergence of a piRNA-producing locus.果蝇中的变位与 piRNA 产生基因座的出现有关。
Nature. 2012 Oct 4;490(7418):112-5. doi: 10.1038/nature11416. Epub 2012 Aug 26.

果蝇中的piRNA与表观遗传转换

piRNAs and epigenetic conversion in Drosophila.

作者信息

de Vanssay Augustin, Bougé Anne-Laure, Boivin Antoine, Hermant Catherine, Teysset Laure, Delmarre Valérie, Antoniewski Christophe, Ronsseray Stéphane

机构信息

Epigenetic Repression and Mobile DNA; Laboratoire Biologie du Développement; UMR7622; CNRS-Université Pierre et Marie Curie; Paris, France.

Drosophila Genetics and Epigenetics; CNRS URA2578; Institut Pasteur; Paris, France.

出版信息

Fly (Austin). 2013 Oct-Dec;7(4):237-41. doi: 10.4161/fly.26522. Epub 2013 Oct 2.

DOI:10.4161/fly.26522
PMID:24088599
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3896495/
Abstract

Transposable element (TE) activity is repressed in the Drosophila germline by Piwi-Interacting RNAs (piRNAs), a class of small non-coding RNAs. These piRNAs are produced by discrete genomic loci containing TE fragments. In a recent publication, we tested for the existence of a strict epigenetic induction of piRNA production capacity by a locus in the D. melanogaster genome. We used 2 lines carrying a transgenic 7-copy tandem cluster (P-lacZ-white) at the same genomic site. This cluster generates in both lines a local heterochromatic sector. One line (T-1) produces high levels of ovarian piRNAs homologous to the P-lacZ-white transgenes and shows a strong capacity to repress homologous sequences in trans, whereas the other line (BX2) is devoid of both of these capacities. The properties of these 2 lines are perfectly stable over generations. We have shown that the maternal transmission of a cytoplasm carrying piRNAs from the first line can confer to the inert transgenic locus of the second, a totally de novo capacity to produce high levels of piRNAs as well as the ability to induce homology-dependent silencing in trans. These new properties are stably inherited over generations (n>50). Furthermore, the converted locus has itself become able to convert an inert transgenic locus via cytoplasmic maternal inheritance. This results in a stable epigenetic conversion process, which can be performed recurrently--a phenomenon termed paramutation and discovered in Maize 60 y ago. Paramutation in Drosophila corresponds to the first stable paramutation in animals and provides a model system to investigate the epigenetically induced emergence of a piRNA-producing locus, a crucial step in epigenome shaping. In this Extra View, we discuss some additional functional aspects and the possible molecular mechanism of this piRNA-linked paramutation.

摘要

转座元件(TE)的活性在果蝇生殖系中受到Piwi相互作用RNA(piRNA)的抑制,piRNA是一类小的非编码RNA。这些piRNA由包含TE片段的离散基因组位点产生。在最近的一篇论文中,我们测试了果蝇基因组中的一个位点是否对piRNA产生能力存在严格的表观遗传诱导作用。我们使用了两条在同一基因组位点携带转基因7拷贝串联簇(P-lacZ-white)的品系。这个簇在两条品系中都产生一个局部异染色质区段。一个品系(T-1)产生与P-lacZ-white转基因同源的高水平卵巢piRNA,并显示出在反式中抑制同源序列的强大能力,而另一个品系(BX2)则缺乏这两种能力。这两个品系的特性在几代中都非常稳定。我们已经表明,从第一个品系携带piRNA的细胞质的母系传递可以赋予第二个品系惰性转基因位点完全从头产生高水平piRNA的能力,以及在反式中诱导同源依赖性沉默的能力。这些新特性可以稳定地遗传几代(n>50)。此外,转化后的位点本身已经能够通过细胞质母系遗传转化一个惰性转基因位点。这导致了一个稳定的表观遗传转化过程,这个过程可以反复进行——这一现象被称为副突变,是60年前在玉米中发现的。果蝇中的副突变对应于动物中的第一个稳定副突变,并提供了一个模型系统来研究表观遗传诱导的piRNA产生位点的出现,这是表观基因组塑造中的关键一步。在这个附加观点中,我们讨论了这种与piRNA相关副突变的一些其他功能方面和可能的分子机制。