Jain R, Petri M, Kirschbaum S, Feindt H, Steltenkamp S, Sonnenkalb S, Becker S, Griesinger C, Menzel A, Burg T P, Techert S
Structural Dynamics of (Bio)chemical Systems, MPI-BPC, Am Fassberg 11, 37077, Goettingen, Germany.
Eur Phys J E Soft Matter. 2013 Sep;36(9):109. doi: 10.1140/epje/i2013-13109-9. Epub 2013 Sep 27.
Small-angle X-ray scattering provides global, shape-sensitive structural information about macromolecules in solution. Its extension to time dimension in the form of time-resolved SAXS investigations and combination with other time-resolved biophysical methods contributes immensely to the study of protein dynamics. TR-SAXS can also provide unique information about the global structures of transient intermediates during protein dynamics. An experimental set-up with low protein consumption is essential for an extensive use of TR-SAXS experiments on protein dynamics. In this direction, a newly developed 20-microchannel microfluidic continuous-flow mixer was combined with SAXS. With this set-up, we demonstrate ubiquitin unfolding dynamics after rapid mixing with the chaotropic agent Guanidinium-HCl within milliseconds using only ∼ 40 nanoliters of the protein sample per scattering image. It is suggested that, in the future, this new TR-SAXS platform will help to increase the use of time-resolved small-angle X-ray scattering, wide-angle X-ray scattering and neutron scattering experiments for studying protein dynamics in the early millisecond regime. The potential research field for this set-up includes protein folding, protein misfolding, aggregation in amyloidogenic diseases, function of intrinsically disordered proteins and various protein-ligand interactions.
小角X射线散射可提供溶液中大分子的整体、形状敏感的结构信息。将其扩展到时间维度,采用时间分辨小角X射线散射研究的形式,并与其他时间分辨生物物理方法相结合,对蛋白质动力学的研究有巨大贡献。时间分辨小角X射线散射还能提供有关蛋白质动力学过程中瞬态中间体整体结构的独特信息。对于在蛋白质动力学中广泛开展时间分辨小角X射线散射实验而言,低蛋白质消耗的实验装置至关重要。在此方面,一种新开发的20微通道微流控连续流混合器与小角X射线散射相结合。利用该装置,我们仅在每个散射图像使用约40纳升蛋白质样品的情况下,展示了泛素与离液剂盐酸胍快速混合后在毫秒内的解折叠动力学。建议在未来,这个新的时间分辨小角X射线散射平台将有助于增加时间分辨小角X射线散射、广角X射线散射和中子散射实验在研究早期毫秒级蛋白质动力学方面的应用。该装置的潜在研究领域包括蛋白质折叠、蛋白质错误折叠、淀粉样变性疾病中的聚集、内在无序蛋白质的功能以及各种蛋白质-配体相互作用。