Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560012 (India), Fax: (+91) 80-3600683; NMR Research Centre, Indian Institute of Science, Bangalore 560012 (India).
Chemistry. 2013 Nov 4;19(45):15175-89. doi: 10.1002/chem.201301722. Epub 2013 Sep 23.
Conformational diversity or "shapeshifting" in cyclic peptide natural products can, in principle, confer a single molecular entity with the property of binding to multiple receptors. Conformational equilibria have been probed in the contryphans, which are peptides derived from Conus venom possessing a 23-membered cyclic disulfide moiety. The natural sequences derived from Conus inscriptus, GCV(D)LYPWC* (In936) and Conus loroisii, GCP(D)WDPWC* (Lo959) differ in the number of proline residues within the macrocyclic ring. Structural characterisation of distinct conformational states arising from cis-trans equilibria about Xxx-Pro bonds is reported. Isomerisation about the C2-P3 bond is observed in the case of Lo959 and about the Y5-P6 bond in In936. Evidence is presented for as many as four distinct species in the case of the synthetic analogue V3P In936. The Tyr-Pro-Trp segment in In936 is characterised by distinct sidechain orientations as a consequence of aromatic/proline interactions as evidenced by specific sidechain-sidechain nuclear Overhauser effects and ring current shifted proton chemical shifts. Molecular dynamics simulations suggest that Tyr5 and Trp7 sidechain conformations are correlated and depend on the geometry of the Xxx-Pro bond. Thermodynamic parameters are derived for the cis↔trans equilibrium for In936. Studies on synthetic analogues provide insights into the role of sequence effects in modulating isomerisation about Xxx-Pro bonds.
环肽天然产物的构象多样性或“形状变化”原则上可以使单一分子实体具有结合多个受体的性质。在来自 Conus 毒液的具有 23 元环二硫键部分的肽 contryphans 中已经探测到构象平衡。来自 Conus inscriptus 的天然序列 GCV(D)LYPWC*(In936)和来自 Conus loroisii 的 GCP(D)WDPWC*(Lo959)在大环环内的脯氨酸残基数量上有所不同。报道了源自 cis-trans 平衡的不同构象态的结构特征关于 Xxx-Pro 键。在 Lo959 中观察到 C2-P3 键的异构化,而在 In936 中观察到 Y5-P6 键的异构化。在合成类似物 V3P In936 的情况下,存在多达四种不同的物种的证据。In936 中的 Tyr-Pro-Trp 片段由于芳香族/脯氨酸相互作用而具有独特的侧链取向,这一点可以通过特定的侧链-侧链核 Overhauser 效应和环电流位移质子化学位移来证明。分子动力学模拟表明 Tyr5 和 Trp7 侧链构象是相关的,并且取决于 Xxx-Pro 键的几何形状。推导了 In936 中 cis↔trans 平衡的热力学参数。对合成类似物的研究提供了有关序列效应在调节 Xxx-Pro 键异构化方面的作用的见解。