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大肠杆菌K-12外膜孔蛋白功能域的定位

Localization of functional domains in E. coli K-12 outer membrane porins.

作者信息

Tommassen J, van der Ley P, van Zeijl M, Agterberg M

出版信息

EMBO J. 1985 Jun;4(6):1583-7. doi: 10.1002/j.1460-2075.1985.tb03820.x.

DOI:10.1002/j.1460-2075.1985.tb03820.x
PMID:2411544
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC554385/
Abstract

The genes ompC and phoE of Escherichia coli K-12 encode outer membrane pore proteins that are very homologous. To study the structure-function relationship of these proteins, we have constructed a series of ompC-phoE hybrid genes in which the DNA encoding part of one protein is replaced by the corresponding part of the other gene. These hybrid genes were easily obtained by using in vivo recombination. The fusion sites in the hybrid genes were localized by restriction enzyme mapping. The hybrid gene products were normally expressed and they were characterized with respect to functions and properties in which the native OmpC and PhoE proteins differ, such as pore characteristics, the receptor activity for phages and the binding of specific antibodies. Three regions within the N-terminal 130 amino acids were localized which determine pore characteristics and a segment between residues 75 and 110 contains amino acids which determine specificity for PhoE phages. A major cell surface-exposed region is located between residues 142 and 267. This region contains residues which are required for the binding of monoclonal antibodies directed against the cell surface-exposed part of PhoE and residues which determine specificity for OmpC phages.

摘要

大肠杆菌K-12的ompC和phoE基因编码非常同源的外膜孔蛋白。为了研究这些蛋白质的结构-功能关系,我们构建了一系列ompC-phoE杂交基因,其中一个蛋白质编码部分的DNA被另一个基因的相应部分所取代。这些杂交基因通过体内重组很容易获得。通过限制性酶切图谱确定了杂交基因中的融合位点。杂交基因产物正常表达,并就天然OmpC和PhoE蛋白不同的功能和特性进行了表征,如孔特征、噬菌体受体活性和特异性抗体的结合。确定了N端130个氨基酸内的三个区域决定孔特征,75至110位残基之间的一段含有决定对PhoE噬菌体特异性的氨基酸。一个主要的细胞表面暴露区域位于142至267位残基之间。该区域包含针对PhoE细胞表面暴露部分的单克隆抗体结合所需的残基以及决定对OmpC噬菌体特异性的残基。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/acec/554385/53304e8ebc24/emboj00271-0215-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/acec/554385/53304e8ebc24/emboj00271-0215-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/acec/554385/53304e8ebc24/emboj00271-0215-a.jpg

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本文引用的文献

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The ultimate localization of an outer membrane protein of Escherichia coli K-12 is not determined by the signal sequence.大肠杆菌K-12外膜蛋白的最终定位不是由信号序列决定的。
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Outer membrane protein e of Escherichia coli K-12 is co-regulated with alkaline phosphatase.大肠杆菌K-12的外膜蛋白e与碱性磷酸酶共同调控。
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Characterization of the distal tail fiber locus and determination of the receptor for phage AR1, which specifically infects Escherichia coli O157:H7.噬菌体AR1特异性感染大肠杆菌O157:H7,对其远端尾丝基因座进行表征并确定其受体。
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A study of AroP-PheP chimeric proteins and identification of a residue involved in tryptophan transport.AroP-PheP嵌合蛋白的研究及色氨酸转运相关残基的鉴定。
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Porins of Escherichia coli: unidirectional gating by pressure.大肠杆菌的孔蛋白:压力介导的单向门控
EMBO J. 1996 Jul 15;15(14):3524-8.
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Localization of functional domains in the Escherichia coli coprogen receptor FhuE and the Pseudomonas putida ferric-pseudobactin 358 receptor PupA.大肠杆菌粪卟啉原受体FhuE和恶臭假单胞菌铁假菌素358受体PupA中功能域的定位
Mol Gen Genet. 1994 Dec 15;245(6):694-703. doi: 10.1007/BF00297276.
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Construction of a series of ompC-ompF chimeric genes by in vivo homologous recombination in Escherichia coli and characterization of their translational products.
Mol Gen Genet. 1987 May;207(2-3):217-23. doi: 10.1007/BF00331581.
10
Bacteriophage lambda receptor site on the Escherichia coli K-12 LamB protein.大肠杆菌K-12 LamB蛋白上的噬菌体λ受体位点。
J Bacteriol. 1987 May;169(5):2103-6. doi: 10.1128/jb.169.5.2103-2106.1987.
通过磷酸盐限制表达大肠杆菌K12的外膜蛋白e
FEBS Lett. 1980 Apr 7;112(2):229-32. doi: 10.1016/0014-5793(80)80186-4.
4
Recognition site for phosphorus-containing compounds and other negatively charged solutes on the PhoE protein pore of the outer membrane of Escherichia coli K12.大肠杆菌K12外膜PhoE蛋白孔上含磷化合物及其他带负电荷溶质的识别位点。
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5
Gene encoding a hybrid OmpF--PhoE pore protein in the outer membrane of Escherichia coli K12.编码大肠杆菌K12外膜中杂合OmpF-PhoE孔蛋白的基因。
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6
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Complete nucleotide sequence of phoE, the structural gene for the phosphate limitation inducible outer membrane pore protein of Escherichia coli K12.大肠杆菌K12中受磷酸盐限制诱导的外膜孔蛋白的结构基因phoE的完整核苷酸序列。
J Mol Biol. 1983 Feb 5;163(4):513-32. doi: 10.1016/0022-2836(83)90110-9.
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Outer-membrane protein PhoE from Escherichia coli forms anion-selective pores in lipid-bilayer membranes.来自大肠杆菌的外膜蛋白PhoE在脂质双层膜中形成阴离子选择性孔道。
Eur J Biochem. 1984 Apr 16;140(2):319-24. doi: 10.1111/j.1432-1033.1984.tb08104.x.
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Formation of genes coding for hybrid proteins by recombination between related, cloned genes in E. coli.通过大肠杆菌中相关克隆基因之间的重组形成编码杂合蛋白的基因。
Nucleic Acids Res. 1983 Aug 25;11(16):5661-9. doi: 10.1093/nar/11.16.5661.
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A comparative study on the genes for three porins of the Escherichia coli outer membrane. DNA sequence of the osmoregulated ompC gene.大肠杆菌外膜三种孔蛋白基因的比较研究。渗透调节型ompC基因的DNA序列。
J Biol Chem. 1983 Jun 10;258(11):6932-40.