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鸡毒支原体中的DNA修复

DNA repair in Mycoplasma gallisepticum.

作者信息

Gorbachev Alexey Y, Fisunov Gleb Y, Izraelson Mark, Evsyutina Darya V, Mazin Pavel V, Alexeev Dmitry G, Pobeguts Olga V, Gorshkova Tatyana N, Kovalchuk Sergey I, Kamashev Dmitry E, Govorun Vadim M

机构信息

Research Institute of Physico-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow 119992, Russian Federation.

出版信息

BMC Genomics. 2013 Oct 23;14:726. doi: 10.1186/1471-2164-14-726.

Abstract

BACKGROUND

DNA repair is essential for the maintenance of genome stability in all living beings. Genome size as well as the repertoire and abundance of DNA repair components may vary among prokaryotic species. The bacteria of the Mollicutes class feature a small genome size, absence of a cell wall, and a parasitic lifestyle. A small number of genes make Mollicutes a good model for a "minimal cell" concept.

RESULTS

In this work we studied the DNA repair system of Mycoplasma gallisepticum on genomic, transcriptional, and proteomic levels. We detected 18 out of 22 members of the DNA repair system on a protein level. We found that abundance of the respective mRNAs is less than one per cell. We studied transcriptional response of DNA repair genes of M. gallisepticum at stress conditions including heat, osmotic, peroxide stresses, tetracycline and ciprofloxacin treatment, stationary phase and heat stress in stationary phase.

CONCLUSIONS

Based on comparative genomic study, we determined that the DNA repair system M. gallisepticum includes a sufficient set of proteins to provide a cell with functional nucleotide and base excision repair and mismatch repair. We identified SOS-response in M. gallisepticum on ciprofloxacin, which is a known SOS-inducer, tetracycline and heat stress in the absence of established regulators. Heat stress was found to be the strongest SOS-inducer. We found that upon transition to stationary phase of culture growth transcription of DNA repair genes decreases dramatically. Heat stress does not induce SOS-response in a stationary phase.

摘要

背景

DNA修复对于维持所有生物的基因组稳定性至关重要。原核生物物种之间的基因组大小以及DNA修复成分的种类和丰度可能有所不同。柔膜菌纲细菌具有基因组小、无细胞壁和寄生生活方式的特点。少数基因使柔膜菌成为“最小细胞”概念的良好模型。

结果

在这项工作中,我们从基因组、转录组和蛋白质组水平研究了鸡毒支原体的DNA修复系统。我们在蛋白质水平上检测到了DNA修复系统22个成员中的18个。我们发现相应mRNA的丰度在每个细胞中不到一个。我们研究了鸡毒支原体DNA修复基因在热、渗透、过氧化物应激、四环素和环丙沙星处理、稳定期以及稳定期热应激等应激条件下的转录反应。

结论

基于比较基因组研究,我们确定鸡毒支原体的DNA修复系统包括一组足够的蛋白质,可为细胞提供功能性核苷酸和碱基切除修复以及错配修复。我们在鸡毒支原体中鉴定出对环丙沙星(一种已知的SOS诱导剂)、四环素和热应激的SOS反应,而不存在已确定的调节因子。热应激被发现是最强的SOS诱导剂。我们发现,在培养生长进入稳定期时,DNA修复基因的转录会急剧下降。热应激在稳定期不会诱导SOS反应。

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