School of Chemistry and Chemical Engineering, South China University of Technology , Guangzhou, Guangdong 510640, China.
ACS Nano. 2013 Nov 26;7(11):10148-57. doi: 10.1021/nn4043628. Epub 2013 Oct 25.
Biological protein channels have many remarkable properties such as gating, high permeability, and selectivity, which have motivated researchers to mimic their functions for practical applications. Herein, using molecular dynamics simulations, we design bioinspired nanopores in graphene sheets that can discriminate between Na(+) and K(+), two ions with very similar properties. The simulation results show that, under transmembrane voltage bias, a nanopore containing four carbonyl groups to mimic the selectivity filter of the KcsA K(+) channel preferentially conducts K(+) over Na(+). A nanopore functionalized by four negatively charged carboxylate groups to mimic the selectivity filter of the NavAb Na(+) channel selectively binds Na(+) but transports K(+) over Na(+). Surprisingly, the ion selectivity of the smaller diameter pore containing three carboxylate groups can be tuned by changing the magnitude of the applied voltage bias. Under lower voltage bias, it transports ions in a single-file manner and exhibits Na(+) selectivity, dictated by the knock-on ion conduction and selective blockage by Na(+). Under higher voltage bias, the nanopore is K(+)-selective, as the blockage by Na(+) is destabilized and the stronger affinity for carboxylate groups slows the passage of Na(+) compared with K(+). The computational design of biomimetic ion-selective nanopores helps to understand the mechanisms of selectivity in biological ion channels and may also lead to a wide range of potential applications such as sensitive ion sensors, nanofiltration membranes for Na(+)/K(+) separation, and voltage-tunable nanofluidic devices.
生物蛋白通道具有许多显著的特性,如门控、高通透性和选择性,这激发了研究人员模仿它们的功能用于实际应用。在此,我们通过分子动力学模拟,在石墨烯片上设计了仿生纳米孔,可区分具有非常相似性质的两种离子 Na(+) 和 K(+)。模拟结果表明,在跨膜电压偏置下,含有四个羰基基团的纳米孔可以模拟 KcsA K(+) 通道的选择性过滤器,优先传导 K(+)而不是 Na(+)。通过四个带负电荷的羧酸盐基团官能化的纳米孔可以模拟 NavAb Na(+) 通道的选择性过滤器,选择性地结合 Na(+)但运输 K(+)而不是 Na(+)。令人惊讶的是,含有三个羧酸盐基团的较小直径纳米孔的离子选择性可以通过改变施加的电压偏置来调节。在较低的电压偏置下,它以单分子的方式传输离子,表现出 Na(+)选择性,这是由离子碰撞传导和 Na(+)的选择性阻塞决定的。在较高的电压偏置下,纳米孔对 K(+)具有选择性,因为 Na(+)的阻塞被破坏,并且与 K(+)相比,对羧酸盐基团的更强亲和力减缓了 Na(+)的通过。仿生离子选择性纳米孔的计算设计有助于理解生物离子通道选择性的机制,并且还可能导致广泛的潜在应用,例如灵敏的离子传感器、用于 Na(+) / K(+)分离的纳滤膜和电压可调谐的纳米流控器件。