• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

生态位分化与中性过程:环境与遗传综合分析揭示近缘松树种间分化的不同模式

Niche divergence versus neutral processes: combined environmental and genetic analyses identify contrasting patterns of differentiation in recently diverged pine species.

作者信息

Moreno-Letelier Alejandra, Ortíz-Medrano Alejandra, Piñero Daniel

机构信息

Departamento de Ecología Evolutiva, Instituto de Ecologia, Universidad Nacional Autonoma de México, México D.F., Mexico.

出版信息

PLoS One. 2013 Oct 29;8(10):e78228. doi: 10.1371/journal.pone.0078228. eCollection 2013.

DOI:10.1371/journal.pone.0078228
PMID:24205167
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3812143/
Abstract

BACKGROUND AND AIMS

Solving relationships of recently diverged taxa, poses a challenge due to shared polymorphism and weak reproductive barriers. Multiple lines of evidence are needed to identify independently evolving lineages. This is especially true of long-lived species with large effective population sizes, and slow rates of lineage sorting. North American pines are an interesting group to test this multiple approach. Our aim is to combine cytoplasmic genetic markers with environmental information to clarify species boundaries and relationships of the species complex of Pinus flexilis, Pinus ayacahuite, and Pinus strobiformis.

METHODS

Mitochondrial and chloroplast sequences were combined with previously obtained microsatellite data and contrasted with environmental information to reconstruct phylogenetic relationships of the species complex. Ecological niche models were compared to test if ecological divergence is significant among species.

KEY RESULTS AND CONCLUSION

Separately, both genetic and ecological evidence support a clear differentiation of all three species but with different topology, but also reveal an ancestral contact zone between P. strobiformis and P. ayacahuite. The marked ecological differentiation of P. flexilis suggests that ecological speciation has occurred in this lineage, but this is not reflected in neutral markers. The inclusion of environmental traits in phylogenetic reconstruction improved the resolution of internal branches. We suggest that combining environmental and genetic information would be useful for species delimitation and phylogenetic studies in other recently diverged species complexes.

摘要

背景与目的

由于共享多态性和较弱的生殖隔离,解决最近分化的分类群之间的关系具有挑战性。需要多条证据来识别独立进化的谱系。对于有效种群规模大、谱系分选速率慢的长寿物种来说尤其如此。北美松树是测试这种多方法的一个有趣群体。我们的目的是将细胞质遗传标记与环境信息相结合,以阐明柔枝松、阿亚卡维松和球果松物种复合体的物种界限和关系。

方法

将线粒体和叶绿体序列与先前获得的微卫星数据相结合,并与环境信息进行对比,以重建该物种复合体的系统发育关系。比较生态位模型,以检验物种间的生态分化是否显著。

关键结果与结论

分别来看,遗传和生态证据均支持所有三个物种的明显分化,但拓扑结构不同,同时还揭示了球果松和阿亚卡维松之间的一个祖先接触区。柔枝松显著的生态分化表明该谱系中发生了生态物种形成,但这在中性标记中并未体现。在系统发育重建中纳入环境特征提高了内部分支的分辨率。我们认为,将环境和遗传信息相结合,对于其他最近分化的物种复合体的物种界定和系统发育研究将是有用的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a293/3812143/de4d6c0c1e37/pone.0078228.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a293/3812143/21fb9e8ec6c3/pone.0078228.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a293/3812143/94803004d90b/pone.0078228.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a293/3812143/95f69d79f74a/pone.0078228.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a293/3812143/1cd21069bfc8/pone.0078228.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a293/3812143/de4d6c0c1e37/pone.0078228.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a293/3812143/21fb9e8ec6c3/pone.0078228.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a293/3812143/94803004d90b/pone.0078228.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a293/3812143/95f69d79f74a/pone.0078228.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a293/3812143/1cd21069bfc8/pone.0078228.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a293/3812143/de4d6c0c1e37/pone.0078228.g005.jpg

相似文献

1
Niche divergence versus neutral processes: combined environmental and genetic analyses identify contrasting patterns of differentiation in recently diverged pine species.生态位分化与中性过程:环境与遗传综合分析揭示近缘松树种间分化的不同模式
PLoS One. 2013 Oct 29;8(10):e78228. doi: 10.1371/journal.pone.0078228. eCollection 2013.
2
Genetic, morphological, geographical and ecological approaches reveal phylogenetic relationships in complex groups, an example of recently diverged pinyon pine species (Subsection Cembroides).遗传、形态、地理和生态方法揭示了复杂群体中的系统发育关系,这是最近分化的 Pinus 松属物种( Subsection Cembroides )的一个例子。
Mol Phylogenet Evol. 2013 Dec;69(3):940-9. doi: 10.1016/j.ympev.2013.06.010. Epub 2013 Jul 2.
3
Speciation history of three closely related pines Pinus mugo (T.), P. uliginosa (N.) and P. sylvestris (L.).三种密切相关的松树(欧洲赤松、高山松和欧洲云杉)的物种形成历史。
Mol Ecol. 2011 Apr;20(8):1729-43. doi: 10.1111/j.1365-294X.2011.05037.x. Epub 2011 Mar 7.
4
The role of hybridization during ecological divergence of southwestern white pine (Pinus strobiformis) and limber pine (P. flexilis).西南白皮松(Pinus strobiformis)和软叶松(P. flexilis)生态分歧过程中杂交的作用。
Mol Ecol. 2018 Mar;27(5):1245-1260. doi: 10.1111/mec.14505. Epub 2018 Mar 15.
5
Impact of Geography and Climate on the Genetic Differentiation of the Subtropical Pine Pinus yunnanensis.地理和气候对亚热带松树云南松遗传分化的影响
PLoS One. 2013 Jun 26;8(6):e67345. doi: 10.1371/journal.pone.0067345. Print 2013.
6
Cross-species transferability of eastern white pine (Pinus strobus) nuclear microsatellite markers to five Mexican white pines.东部白松(Pinus strobus)核微卫星标记对五种墨西哥白松的跨物种转移性
Genet Mol Res. 2014 Sep 12;13(3):7571-6. doi: 10.4238/2014.September.12.24.
7
Climatic niche and neutral genetic diversity of the six Iberian pine species: a retrospective and prospective view.六种植被的气候生态位和中性遗传多样性:回顾与展望。
Mol Ecol. 2010 Apr;19(7):1396-409. doi: 10.1111/j.1365-294X.2010.04571.x. Epub 2010 Feb 24.
8
Importance of incomplete lineage sorting and introgression in the origin of shared genetic variation between two closely related pines with overlapping distributions.不完全谱系分选和基因渗入在两个分布重叠的近缘松树之间共享遗传变异起源中的重要性。
Heredity (Edinb). 2017 Mar;118(3):211-220. doi: 10.1038/hdy.2016.72. Epub 2016 Sep 21.
9
Comparative Association Mapping Reveals Conservation of Major Gene Resistance to White Pine Blister Rust in Southwestern White Pine () and Limber Pine ().比较关联图谱揭示了西南白松()和柔枝松()对白松疱锈病的主要基因抗性的保守性。
Phytopathology. 2022 May;112(5):1093-1102. doi: 10.1094/PHYTO-09-21-0382-R. Epub 2022 Apr 2.
10
Phylogeny and biogeography of the American live oaks (Quercus subsection Virentes): a genomic and population genetics approach.美国活橡树(栎属绿栎亚组)的系统发育与生物地理学:一种基因组学和群体遗传学方法
Mol Ecol. 2015 Jul;24(14):3668-87. doi: 10.1111/mec.13269. Epub 2015 Jul 14.

引用本文的文献

1
Niche comparisons reveal significant divergence despite narrow endemism in Leavenworthia, a genus of rare plants.生态位比较显示,尽管稀有植物属Leavenworthia的特有性狭窄,但仍存在显著差异。
Ann Bot. 2025 May 9;135(5):935-948. doi: 10.1093/aob/mcae226.
2
Plastome phylogenomics reveals an early Pliocene North- and Central America colonization by long-distance dispersal from South America of a highly diverse bromeliad lineage.质体基因组系统发育学揭示了一个高度多样化的凤梨科谱系在早更新世通过从南美洲远距离扩散而在北美洲和中美洲的早期定殖。
Front Plant Sci. 2023 Jun 23;14:1205511. doi: 10.3389/fpls.2023.1205511. eCollection 2023.
3

本文引用的文献

1
jModelTest 2: more models, new heuristics and parallel computing.jModelTest 2:更多模型、新启发式方法与并行计算。
Nat Methods. 2012 Jul 30;9(8):772. doi: 10.1038/nmeth.2109.
2
What can patterns of differentiation across plant genomes tell us about adaptation and speciation?植物基因组分化模式能告诉我们关于适应和物种形成的什么信息?
Philos Trans R Soc Lond B Biol Sci. 2012 Feb 5;367(1587):364-73. doi: 10.1098/rstb.2011.0199.
3
Chloroplast DNA phylogeography of a distylous shrub (Palicourea padifolia, Rubiaceae) reveals past fragmentation and demographic expansion in Mexican cloud forests.
Incipient speciation, high genetic diversity, and ecological divergence in the alligator bark juniper suggest complex demographic changes during the Pleistocene.
在渐新世,鳄皮柏的物种形成初期、高遗传多样性和生态分歧表明,在更新世期间发生了复杂的人口变化。
PeerJ. 2022 Jul 26;10:e13802. doi: 10.7717/peerj.13802. eCollection 2022.
4
Coalescent-based species delimitation in North American pinyon pines using low-copy nuclear genes and plastomes.基于合并分析的北美 Pinaceae 松属植物种的界定:利用低拷贝核基因和质体基因组。
Am J Bot. 2022 May;109(5):706-726. doi: 10.1002/ajb2.1847. Epub 2022 May 8.
5
Adaptive evolution in a conifer hybrid zone is driven by a mosaic of recently introgressed and background genetic variants.在一个针叶树杂交区,适应性进化是由最近渗入的和背景遗传变异的镶嵌体驱动的。
Commun Biol. 2021 Feb 5;4(1):160. doi: 10.1038/s42003-020-01632-7.
6
Tracing the footprints of a moving hybrid zone under a demographic history of speciation with gene flow.在具有基因流的物种形成人口统计学历史背景下追踪移动杂交带的足迹。
Evol Appl. 2019 Apr 29;13(1):195-209. doi: 10.1111/eva.12795. eCollection 2020 Jan.
7
On the origins of Balkan endemics: the complex evolutionary history of the Cyanus napulifer group (Asteraceae).论巴尔干地区特有植物的起源:蓝刺头组(菊科)复杂的进化史。
Ann Bot. 2016 Nov;118(6):1071-1088. doi: 10.1093/aob/mcw142. Epub 2016 Jul 21.
8
Oceanographic Conditions Limit the Spread of a Marine Invader along Southern African Shores.海洋学条件限制了一种海洋入侵物种在南非海岸的扩散。
PLoS One. 2015 Jun 26;10(6):e0128124. doi: 10.1371/journal.pone.0128124. eCollection 2015.
9
Evolutionary dynamics of ecological niche in three Rhinogobio fishes from the upper Yangtze River inferred from morphological traits.基于形态特征推断长江上游三种纹胸鮡鱼类生态位的进化动态。
Ecol Evol. 2015 Feb;5(3):567-77. doi: 10.1002/ece3.1386. Epub 2015 Jan 7.
叶绿体 DNA 系统地理学研究揭示墨西哥云雾林中一种二型花柱的灌木(Palicourea padifolia,茜草科)的历史片段化和种群扩张。
Mol Phylogenet Evol. 2011 Dec;61(3):603-15. doi: 10.1016/j.ympev.2011.08.023. Epub 2011 Sep 10.
4
Species delimitation in the continental forms of the genus Epicrates (Serpentes, Boidae) integrating phylogenetics and environmental niche models.大陆型美洲鬣蜥属(蛇目,蚺科)物种划分:系统发育学与环境生态位模型整合。
PLoS One. 2011;6(9):e22199. doi: 10.1371/journal.pone.0022199. Epub 2011 Sep 2.
5
Genetic admixture in multidimensional environmental space: asymmetrical niche similarity promotes gene flow in armadillos (Dasypus novemcinctus).多维环境空间中的遗传混合:不对称生态位相似性促进犰狳(Dasypus novemcinctus)的基因流动。
Evolution. 2011 Sep;65(9):2470-80. doi: 10.1111/j.1558-5646.2011.01329.x. Epub 2011 May 17.
6
Evaluation of a bayesian coalescent method of species delimitation.贝叶斯支系发生法在物种界定中的评估。
Syst Biol. 2011 Dec;60(6):747-61. doi: 10.1093/sysbio/syr071. Epub 2011 Aug 29.
7
Phylogenetic and coalescent strategies of species delimitation in snubnose darters (Percidae: Etheostoma).短吻鮈属鱼类(鮈科:Etheostoma)的物种界定的系统发育和合并策略。
Syst Biol. 2012 Jan;61(1):63-79. doi: 10.1093/sysbio/syr077. Epub 2011 Aug 9.
8
The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis.龟兔赛跑 II:21 个非编码叶绿体 DNA 序列在系统发育分析中的相对效用。
Am J Bot. 2005 Jan;92(1):142-66. doi: 10.3732/ajb.92.1.142.
9
Evolutionary relationships among Pinus (Pinaceae) subsections inferred from multiple low-copy nuclear loci.基于多个低拷贝核基因座推断松属(松科)亚组间的进化关系。
Am J Bot. 2005 Dec;92(12):2086-100. doi: 10.3732/ajb.92.12.2086.
10
Long-distance pine pollen still germinates after meso-scale dispersal.中尺度扩散后,长距离松花粉仍能发芽。
Am J Bot. 2010 May;97(5):846-55. doi: 10.3732/ajb.0900255. Epub 2010 Mar 26.