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The key role of a non-active-site residue Met148 on the catalytic efficiency of meta-cleavage product hydrolase BphD.非活性位点残基 Met148 在间位裂解产物水解酶 BphD 的催化效率中的关键作用。
Appl Microbiol Biotechnol. 2013 Dec;97(24):10399-411. doi: 10.1007/s00253-013-4814-0. Epub 2013 Mar 14.
2
Promiscuous esterase activities of the C-C hydrolases from Dyella ginsengisoli.人参 Dyella 中 C-C 水解酶的混杂酯酶活性。
Biotechnol Lett. 2012 Jun;34(6):1107-13. doi: 10.1007/s10529-012-0880-0. Epub 2012 Feb 24.
3
Metabolic characterization and genes for the conversion of biphenyl in Dyella ginsengisoli LA-4.人参糖多孢菌 LA-4 中双苯的代谢特征及转化基因。
Biotechnol Bioeng. 2012 Feb;109(2):609-13. doi: 10.1002/bit.23333. Epub 2011 Sep 28.
4
Biodecolorization of Acid Red GR by a newly isolated Dyella ginsengisoli LA-4 using response surface methodology.利用响应面法研究一株新分离的人参格氏戴夫菌 LA-4 对偶氮染料酸性红 GR 的生物脱色。
J Hazard Mater. 2010 Sep 15;181(1-3):602-8. doi: 10.1016/j.jhazmat.2010.05.055. Epub 2010 May 21.
5
Characterization of a newly isolated biphenyl-degrading bacterium, Dyella ginsengisoli LA-4.丁香假单胞菌 LA-4 一株新分离的联苯降解菌的特性。
Appl Biochem Biotechnol. 2009 Dec;159(3):687-95. doi: 10.1007/s12010-008-8513-8. Epub 2009 Jan 21.
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Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒:使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
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The RAST Server: rapid annotations using subsystems technology.RAST服务器:使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
8
KEGG: kyoto encyclopedia of genes and genomes.京都基因与基因组百科全书(KEGG)
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The microbial metabolism of biphenyl.联苯的微生物代谢
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10
Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multicomponent polychlorinated-biphenyl-degrading enzyme in Pseudomonas strain LB400.对编码联苯双加氧酶的基因进行核苷酸测序和转录图谱分析,联苯双加氧酶是假单胞菌属LB400菌株中一种多组分的多氯联苯降解酶。
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人参土生代尔菌LA-4菌株的基因组序列,一种高效的芳香族化合物降解菌。

Genome Sequence of Dyella ginsengisoli Strain LA-4, an Efficient Degrader of Aromatic Compounds.

作者信息

Kong Chunlei, Wang Lijuan, Li Pengpeng, Qu Yuanyuan, Tang Hongzhi, Wang Jingwei, Zhou Hao, Ma Qiao, Zhou Jiti, Xu Ping

机构信息

State Key Laboratory of Industrial Ecology and Environmental Engineering (MOE), School of Environmental Science and Technology, Dalian University of Technology, Dalian, China.

出版信息

Genome Announc. 2013 Nov 21;1(6):e00961-13. doi: 10.1128/genomeA.00961-13.

DOI:10.1128/genomeA.00961-13
PMID:24265495
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3837176/
Abstract

Dyella ginsengisoli strain LA-4 can efficiently degrade environmental pollutants such as biphenyl and azo dyes. Here, we present a 4.55-Mb draft genome sequence of strain LA-4, which may provide further insights into the molecular mechanism in environmental pollution remediation.

摘要

人参土壤戴尔福特菌LA-4菌株能够有效降解联苯和偶氮染料等环境污染物。在此,我们公布了LA-4菌株455万个碱基对的基因组草图序列,这可能为深入了解环境污染修复的分子机制提供更多线索。