Xu Fei, Khan I John, McGuinness Kenneth, Parmar Avanish S, Silva Teresita, Murthy N Sanjeeva, Nanda Vikas
Center for Advanced Biotechnology and Medicine, Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University , Piscataway, New Jersey 08854, United States.
J Am Chem Soc. 2013 Dec 18;135(50):18762-5. doi: 10.1021/ja4106545. Epub 2013 Dec 3.
Stereoselectivity is a hallmark of biomolecular processes from catalysis to self-assembly, which predominantly occur between homochiral species. However, both homochiral and heterochiral complexes of synthetic polypeptides have been observed where stereoselectivity hinges on details of intermolecular interactions. This raises the question whether general rules governing stereoselectivity exist. A geometric ridges-in-grooves model of interacting helices indicates that heterochiral associations should generally be favored in this class of structures. We tested this principle using a simplified molecular screw, a collagen peptide triple-helix composed of either l- or d-proline with a cyclic aliphatic side chain. Calculated stabilities of like- and opposite-handed triple-helical pairings indicated a preference for heterospecific associations. Mixing left- and right-handed helices drastically lowered solubility, resulting in micrometer-scale sheet-like assemblies that were one peptide-length thick as characterized with atomic force microscopy. X-ray scattering measurements of interhelical spacing in these sheets support a tight ridges-in-grooves packing of left- and right-handed triple helices.
立体选择性是从催化到自组装等生物分子过程的一个标志,这些过程主要发生在同手性物种之间。然而,已经观察到合成多肽的同手性和异手性复合物,其中立体选择性取决于分子间相互作用的细节。这就提出了一个问题,即是否存在支配立体选择性的一般规则。相互作用螺旋的几何脊-槽模型表明,在这类结构中,异手性缔合通常应该更受青睐。我们使用一种简化的分子螺旋(一种由带有环状脂肪族侧链的L-或D-脯氨酸组成的胶原肽三螺旋)来测试这一原理。计算得到的同向和反向三螺旋配对的稳定性表明,更倾向于异特异性缔合。混合左旋和右旋螺旋会大大降低溶解度,形成微米级的片状聚集体,其厚度为一个肽长度,这是通过原子力显微镜表征的。这些片中螺旋间间距的X射线散射测量结果支持左旋和右旋三螺旋紧密的脊-槽堆积。