Song Yang, Fahs Abrahim, Feldman Charles, Shah Suraj, Gu Yali, Wang Yifan, Machado Roberto F, Wunderink Richard G, Chen Jiwang
Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201 USA.
Springerplus. 2013 Nov 19;2:616. doi: 10.1186/2193-1801-2-616. eCollection 2013.
Blood paper cards provide an effective DNA storage method. In this study, we used three DNA dissolving reagents (Tris-EDTA [TE] buffer, Tris-HCl buffer, and water) and one common commercially available kit (DN131 from MRC Inc) to elute DNA from 105 human blood paper cards collected up to 10 years ago. These DNA samples were used as templates for amplification of a single nucleotide polymorphism (SNP, C125T) region of human caspase-12 by PCR and a specific Taqman genotyping assay using the same amount of DNA. We show that DNA isolated by Tris-HCl buffer has higher yield and quality in comparison to DN131 solution. PCR success rate to amplify caspase-12 C125T SNP using Tris-HCl is comparable to the method using DN131 (89.5% vs 87.6%). The Taqman genotyping success rate using Tris-HCl is higher than using DN131 (81.9% vs 70.5%). Using TE or water, PCR success rates are lower than using DN131 (73.3% [TE]; 72.4% [H2O]), but Taqman genotyping success rates are comparable to the method using DN131 (70.5% [TE]; 79.1% [H2O]). We concluded that using Tris-HCl is a reliable and effective method to elute DNA from old human blood paper cards. The crude DNA isolated by Tris-HCl can be used to study genetic polymorphisms in human populations.
血斑卡提供了一种有效的DNA存储方法。在本研究中,我们使用了三种DNA溶解试剂(Tris-EDTA [TE]缓冲液、Tris-HCl缓冲液和水)以及一种常见的市售试剂盒(MRC公司的DN131),从105张采集时间长达10年的人类血斑卡中洗脱DNA。这些DNA样本被用作模板,通过PCR扩增人半胱天冬酶-12的单核苷酸多态性(SNP,C125T)区域,并使用相同量的DNA进行特异性Taqman基因分型检测。我们发现,与DN131溶液相比,用Tris-HCl缓冲液分离的DNA产量更高、质量更好。使用Tris-HCl扩增半胱天冬酶-12 C125T SNP的PCR成功率与使用DN131的方法相当(89.5%对87.6%)。使用Tris-HCl的Taqman基因分型成功率高于使用DN131的方法(81.9%对70.5%)。使用TE或水时,PCR成功率低于使用DN131(73.3% [TE];72.4% [水]),但Taqman基因分型成功率与使用DN131的方法相当(70.5% [TE];79.1% [水])。我们得出结论,使用Tris-HCl是从陈旧的人类血斑卡中洗脱DNA的一种可靠且有效的方法。用Tris-HCl分离得到的粗DNA可用于研究人群中的基因多态性。