Suppr超能文献

新的产类胡萝卜素菌株——西北异常球菌R13的基因组序列草图

Draft Genome Sequence of Deinococcus xibeiensis R13, a New Carotenoid-Producing Strain.

作者信息

Hu Yaochi, Xu Xian, Song Ping, Jiang Ling, Zhang Zhidong, Huang He

机构信息

State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing University of Technology, Nanjing, People's Republic of China.

出版信息

Genome Announc. 2013 Dec 5;1(6):e00987-13. doi: 10.1128/genomeA.00987-13.

Abstract

Deinococcus xibeiensis strain R13, isolated from radiation-contaminated soils, synthesizes a unique ketocarotenoid, deinoxanthin. Here, we present a 3.49-Mb assembly of its genome sequence, which can help us find the key genes of the deinoxanthin biosynthesis pathways and modify genes obtaining a high yield of the new carotenoid.

摘要

从受辐射污染的土壤中分离出的西北异常球菌菌株R13能合成一种独特的酮类胡萝卜素——脱氧叶黄素。在此,我们展示了其基因组序列的3.49兆碱基组装结果,这有助于我们找到脱氧叶黄素生物合成途径的关键基因,并通过修饰基因来获得高产的新类胡萝卜素。

相似文献

1
Draft Genome Sequence of Deinococcus xibeiensis R13, a New Carotenoid-Producing Strain.
Genome Announc. 2013 Dec 5;1(6):e00987-13. doi: 10.1128/genomeA.00987-13.
2
Study of the properties of carotenoids and key carotenoid biosynthesis genes from Deinococcus xibeiensis R13.
Biotechnol Appl Biochem. 2022 Aug;69(4):1459-1473. doi: 10.1002/bab.2217. Epub 2021 Jul 5.
3
Optimization of fermentation conditions for carotenoid production in the radiation-resistant strain Deinococcus xibeiensis R13.
Bioprocess Biosyst Eng. 2019 Apr;42(4):631-642. doi: 10.1007/s00449-018-02069-3. Epub 2019 Jan 3.
4
Deinococcus wulumuqiensis sp. nov., and Deinococcus xibeiensis sp. nov., isolated from radiation-polluted soil.
Int J Syst Evol Microbiol. 2010 Sep;60(Pt 9):2006-2010. doi: 10.1099/ijs.0.015917-0. Epub 2009 Oct 2.
6
Genome Sequence of a Gamma- and UV-Ray-Resistant Strain, Deinococcus wulumuqiensis R12.
Genome Announc. 2013 May 9;1(3):e00206-13. doi: 10.1128/genomeA.00206-13.
7
Metabolic Engineering of Extremophilic Bacterium for the Production of the Novel Carotenoid Deinoxanthin.
Microorganisms. 2020 Dec 25;9(1):44. doi: 10.3390/microorganisms9010044.
8
Identification and characterization of the geranylgeranyl diphosphate synthase in Deinococcus radiodurans.
Lett Appl Microbiol. 2014 Mar;58(3):219-24. doi: 10.1111/lam.12181. Epub 2013 Nov 14.
9
Carotenoid 3',4'-desaturase is involved in carotenoid biosynthesis in the radioresistant bacterium Deinococcus radiodurans.
Microbiology (Reading). 2008 Dec;154(Pt 12):3697-3706. doi: 10.1099/mic.0.2008/021071-0.
10
Photophysics of deinoxanthin, the keto-carotenoid bound to the main S-layer unit of Deinococcus radiodurans.
Photochem Photobiol Sci. 2020 Apr 15;19(4):495-503. doi: 10.1039/d0pp00031k.

本文引用的文献

2
Scaffolding pre-assembled contigs using SSPACE.
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
3
Assembly algorithms for next-generation sequencing data.
Genomics. 2010 Jun;95(6):315-27. doi: 10.1016/j.ygeno.2010.03.001. Epub 2010 Mar 6.
4
Deinococcus wulumuqiensis sp. nov., and Deinococcus xibeiensis sp. nov., isolated from radiation-polluted soil.
Int J Syst Evol Microbiol. 2010 Sep;60(Pt 9):2006-2010. doi: 10.1099/ijs.0.015917-0. Epub 2009 Oct 2.
5
Deinococcus misasensis and Deinococcus roseus, novel members of the genus Deinococcus, isolated from a radioactive site in Japan.
Syst Appl Microbiol. 2008 Mar;31(1):43-9. doi: 10.1016/j.syapm.2007.10.002. Epub 2007 Dec 21.
6
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
7
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验