Department of Medical Physics, School of Medicine, University of Patras, Rion, GR 265 04, Greece.
Med Phys. 2013 Nov;40(11):112506. doi: 10.1118/1.4826162.
The GATE Monte Carlo simulation toolkit is used for the implementation of realistic PET simulations incorporating tumor heterogeneous activity distributions. The reconstructed patient images include noise from the acquisition process, imaging system's performance restrictions and have limited spatial resolution. For those reasons, the measured intensity cannot be simply introduced in GATE simulations, to reproduce clinical data. Investigation of the heterogeneity distribution within tumors applying partial volume correction (PVC) algorithms was assessed. The purpose of the present study was to create a simulated oncology database based on clinical data with realistic intratumor uptake heterogeneity properties.
PET/CT data of seven oncology patients were used in order to create a realistic tumor database investigating the heterogeneity activity distribution of the simulated tumors. The anthropomorphic models (NURBS based cardiac torso and Zubal phantoms) were adapted to the CT data of each patient, and the activity distribution was extracted from the respective PET data. The patient-specific models were simulated with the Monte Carlo Geant4 application for tomography emission (GATE) in three different levels for each case: (a) using homogeneous activity within the tumor, (b) using heterogeneous activity distribution in every voxel within the tumor as it was extracted from the PET image, and (c) using heterogeneous activity distribution corresponding to the clinical image following PVC. The three different types of simulated data in each case were reconstructed with two iterations and filtered with a 3D Gaussian postfilter, in order to simulate the intratumor heterogeneous uptake. Heterogeneity in all generated images was quantified using textural feature derived parameters in 3D according to the ground truth of the simulation, and compared to clinical measurements. Finally, profiles were plotted in central slices of the tumors, across lines with heterogeneous activity distribution for visual assessment.
The accuracy of the simulated database was assessed against the original clinical images. The PVC simulated images matched the clinical ones best. Local, regional, and global features extracted from the PVC simulated images were closest to the clinical measurements, with the exception of the size zone variability and the mean intensity values, where heterogeneous tumors showed better reproducibility. The profiles on PVC simulated tumors after postfiltering seemed to represent the more realistic heterogeneous regions with respect to the clinical reference.
In this study, the authors investigated the input activity map heterogeneity in the GATE simulations of tumors with heterogeneous activity distribution. The most realistic heterogeneous tumors were obtained by inserting PVC activity distributions from the clinical image into the activity map of the simulation. Partial volume effect (PVE) can play a crucial role in the quantification of heterogeneity within tumors and have an important impact on applications such as patient follow-up during treatment and assessment of tumor response to therapy. The development of such a database incorporating patient anatomical and functional variability can be used to evaluate new image processing or analysis algorithms, while providing control of the ground truth, which is not available when dealing with clinical datasets. The database includes all images used and generated in this study, as well as the sinograms and the attenuation phantoms for further investigation. It is freely available to the interested reader of the journal at http://www.med.upatras.gr/oncobase/.
GATE 蒙特卡罗模拟工具包用于实现包含肿瘤异质性活性分布的现实 PET 模拟。重建的患者图像包括采集过程中的噪声、成像系统的性能限制,并且具有有限的空间分辨率。因此,为了再现临床数据,不能简单地将测量的强度引入 GATE 模拟中。研究了应用部分体积校正(PVC)算法的肿瘤内异质性分布。本研究的目的是基于具有真实肿瘤内摄取异质性特性的临床数据创建一个模拟肿瘤数据库。
使用七名肿瘤患者的 PET/CT 数据创建了一个真实肿瘤数据库,以研究模拟肿瘤的异质性活性分布。对人体模型(基于 NURBS 的心脏躯干和 Zubal 体模)进行了适应,以适应每位患者的 CT 数据,并从各自的 PET 数据中提取活性分布。使用用于发射断层扫描的蒙特卡罗 Geant4 应用程序(GATE)模拟患者特异性模型,每个病例有三个不同的水平:(a)在肿瘤内使用均匀的活性,(b)使用从 PET 图像中提取的肿瘤内每个体素的异质活性分布,以及(c)使用 PVC 后对应于临床图像的异质活性分布。在每种情况下,使用两个迭代进行三种不同类型的模拟数据重建,并使用 3D 高斯后滤波器进行滤波,以模拟肿瘤内的异质摄取。根据模拟的地面实况,使用源自 3D 的纹理特征参数量化所有生成图像中的异质性,并与临床测量值进行比较。最后,在肿瘤中央切片上绘制具有异质活性分布的线的轮廓,用于视觉评估。
评估了模拟数据库对原始临床图像的准确性。PVC 模拟图像与临床图像匹配最好。从 PVC 模拟图像中提取的局部、区域和全局特征与临床测量值最接近,除了大小区域变异性和平均强度值外,异质肿瘤的再现性更好。经后滤波器处理后的 PVC 模拟肿瘤的轮廓似乎代表了与临床参考相比更真实的异质区域。
在这项研究中,作者研究了具有异质活性分布的肿瘤 GATE 模拟中输入活性图的异质性。通过将临床图像中的 PVC 活性分布插入模拟的活性图中,获得了最真实的异质肿瘤。部分容积效应(PVE)在肿瘤内异质性的定量中起着至关重要的作用,并对治疗期间患者随访和肿瘤对治疗反应的评估等应用产生重要影响。包含患者解剖和功能变异性的此类数据库的开发可用于评估新的图像处理或分析算法,同时提供地面实况的控制,而处理临床数据集时则无法获得地面实况。该数据库包含本研究中使用和生成的所有图像,以及正弦图和衰减体模,以供进一步研究。有兴趣的读者可以在 http://www.med.upatras.gr/oncobase/ 免费获取该数据库。