• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

在 Ubuntu 软件包大小和哺乳动物体重方面存在软性边界的证据。

Evidence for soft bounds in Ubuntu package sizes and mammalian body masses.

机构信息

Dipartimento di Fisica, Università degli Studi di Milano, I-20133 Milano, Italy.

出版信息

Proc Natl Acad Sci U S A. 2013 Dec 24;110(52):21054-8. doi: 10.1073/pnas.1311124110. Epub 2013 Dec 9.

DOI:10.1073/pnas.1311124110
PMID:24324175
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3876239/
Abstract

The development of a complex system depends on the self-coordinated action of a large number of agents, often determining unexpected global behavior. The case of software evolution has great practical importance: knowledge of what is to be considered atypical can guide developers in recognizing and reacting to abnormal behavior. Although the initial framework of a theory of software exists, the current theoretical achievements do not fully capture existing quantitative data or predict future trends. Here we show that two elementary laws describe the evolution of package sizes in a Linux-based operating system: first, relative changes in size follow a random walk with non-Gaussian jumps; second, each size change is bounded by a limit that is dependent on the starting size, an intriguing behavior that we call "soft bound." Our approach is based on data analysis and on a simple theoretical model, which is able to reproduce empirical details without relying on any adjustable parameter and generates definite predictions. The same analysis allows us to formulate and support the hypothesis that a similar mechanism is shaping the distribution of mammalian body sizes, via size-dependent constraints during cladogenesis. Whereas generally accepted approaches struggle to reproduce the large-mass shoulder displayed by the distribution of extant mammalian species, this is a natural consequence of the softly bounded nature of the process. Additionally, the hypothesis that this model is valid has the relevant implication that, contrary to a common assumption, mammalian masses are still evolving, albeit very slowly.

摘要

复杂系统的发展取决于大量主体的自协调作用,这常常会决定意想不到的全局行为。软件进化的情况具有重要的实际意义:了解哪些是需要考虑的异常情况,可以指导开发人员识别和应对异常行为。尽管已经存在软件理论的初步框架,但目前的理论成果并没有完全捕捉到现有定量数据或预测未来趋势。在这里,我们展示了两个基本定律可以描述基于 Linux 的操作系统中软件包大小的演化:首先,大小的相对变化遵循具有非高斯跳跃的随机游走;其次,每个大小变化都受到一个限制,这个限制取决于起始大小,这种有趣的行为我们称之为“软限制”。我们的方法基于数据分析和一个简单的理论模型,该模型能够在不依赖任何可调参数的情况下重现经验细节,并生成明确的预测。同样的分析使我们能够提出并支持这样一种假设,即类似的机制通过在分支进化过程中对大小的依赖限制,塑造了哺乳动物体型的分布。虽然普遍接受的方法难以再现现存哺乳动物物种分布所显示的大质量肩部,但这是该过程软限制性质的自然结果。此外,该模型有效的假设意味着,与普遍的假设相反,哺乳动物的质量仍在进化,尽管非常缓慢。

相似文献

1
Evidence for soft bounds in Ubuntu package sizes and mammalian body masses.在 Ubuntu 软件包大小和哺乳动物体重方面存在软性边界的证据。
Proc Natl Acad Sci U S A. 2013 Dec 24;110(52):21054-8. doi: 10.1073/pnas.1311124110. Epub 2013 Dec 9.
2
Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).大分子拥挤现象:化学与物理邂逅生物学(瑞士阿斯科纳,2012年6月10日至14日)
Phys Biol. 2013 Aug;10(4):040301. doi: 10.1088/1478-3975/10/4/040301. Epub 2013 Aug 2.
3
Evolutionary model of species body mass diversification.物种体重多样化的进化模型。
Phys Rev Lett. 2009 Jan 23;102(3):038103. doi: 10.1103/PhysRevLett.102.038103. Epub 2009 Jan 22.
4
Extant mammal body masses suggest punctuated equilibrium.现存哺乳动物的体重表明存在间断平衡。
Proc Biol Sci. 2008 Oct 7;275(1648):2195-9. doi: 10.1098/rspb.2008.0354.
5
A General Model for Estimating Macroevolutionary Landscapes.一种估计宏观进化景观的通用模型。
Syst Biol. 2018 Mar 1;67(2):304-319. doi: 10.1093/sysbio/syx075.
6
Resurrection of the Island Rule: Human-Driven Extinctions Have Obscured a Basic Evolutionary Pattern.岛屿法则的复苏:人类导致的物种灭绝掩盖了一种基本的进化模式。
Am Nat. 2016 Jun;187(6):812-20. doi: 10.1086/686268. Epub 2016 Apr 12.
7
Sizing up allometric scaling theory.评估异速生长比例理论。
PLoS Comput Biol. 2008 Sep 12;4(9):e1000171. doi: 10.1371/journal.pcbi.1000171.
8
Transitions between foot postures are associated with elevated rates of body size evolution in mammals.足部姿势的转换与哺乳动物体型进化率的升高有关。
Proc Natl Acad Sci U S A. 2019 Feb 12;116(7):2618-2623. doi: 10.1073/pnas.1814329116. Epub 2019 Jan 28.
9
Evolutionary branching in a stochastic population model with discrete mutational steps.具有离散突变步骤的随机种群模型中的进化分支
Theor Popul Biol. 2013 Feb;83:145-54. doi: 10.1016/j.tpb.2012.09.002. Epub 2012 Sep 17.
10
Effects of allometry, productivity and lifestyle on rates and limits of body size evolution.体尺比例、生产力和生活方式对体型进化的速度和极限的影响。
Proc Biol Sci. 2013 Jun 12;280(1764):20131007. doi: 10.1098/rspb.2013.1007. Print 2013 Aug 7.

引用本文的文献

1
Characterizing the size and shape of sea ice floes.描绘海冰浮冰的大小和形状。
Sci Rep. 2015 May 27;5:10226. doi: 10.1038/srep10226.
2
Diversity and disparity through time in the adaptive radiation of Antarctic notothenioid fishes.南极南极鱼亚目鱼类适应性辐射过程中随时间的多样性与差异
J Evol Biol. 2015 Feb;28(2):376-94. doi: 10.1111/jeb.12570. Epub 2015 Jan 30.

本文引用的文献

1
Universal distribution of component frequencies in biological and technological systems.生物和技术系统中组分频率的普遍分布。
Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):6235-9. doi: 10.1073/pnas.1217795110. Epub 2013 Mar 25.
2
Scaling body size fluctuations.缩放体型波动。
Proc Natl Acad Sci U S A. 2013 Mar 19;110(12):4646-50. doi: 10.1073/pnas.1301552110. Epub 2013 Mar 4.
3
How large should whales be?鲸鱼应该有多大?
PLoS One. 2013;8(1):e53967. doi: 10.1371/journal.pone.0053967. Epub 2013 Jan 10.
4
The maximum rate of mammal evolution.哺乳动物进化的最高速率。
Proc Natl Acad Sci U S A. 2012 Mar 13;109(11):4187-90. doi: 10.1073/pnas.1120774109. Epub 2012 Jan 30.
5
Evolution of a modular software network.模块化软件网络的演变。
Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):19985-9. doi: 10.1073/pnas.1115960108. Epub 2011 Nov 21.
6
The evolution of maximum body size of terrestrial mammals.陆地哺乳动物最大体型的进化。
Science. 2010 Nov 26;330(6008):1216-9. doi: 10.1126/science.1194830.
7
Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks.将基因组比作计算机操作系统,从调控控制网络的拓扑结构和进化方面进行比较。
Proc Natl Acad Sci U S A. 2010 May 18;107(20):9186-91. doi: 10.1073/pnas.0914771107. Epub 2010 May 3.
8
Evolutionary model of species body mass diversification.物种体重多样化的进化模型。
Phys Rev Lett. 2009 Jan 23;102(3):038103. doi: 10.1103/PhysRevLett.102.038103. Epub 2009 Jan 22.
9
Empirical tests of Zipf's law mechanism in open source Linux distribution.开源Linux发行版中齐普夫定律机制的实证测试。
Phys Rev Lett. 2008 Nov 21;101(21):218701. doi: 10.1103/PhysRevLett.101.218701. Epub 2008 Nov 19.
10
How many species have mass M?有多少个物种的质量为 M?
Am Nat. 2009 Feb;173(2):256-63. doi: 10.1086/595760.