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块相关性(BR)分析支持溶质氢键酸度对ΔlogP(辛醇-甲苯)的主导作用。

The Block Relevance (BR) analysis supports the dominating effect of solutes hydrogen bond acidity on ΔlogP(oct-tol).

作者信息

Ermondi Giuseppe, Visconti Alessia, Esposito Roberto, Caron Giulia

机构信息

Molecular Biotechnology and Health Sciences Dept., Università degli Studi di Torino, via Quarello 15, 10135 Torino, Italy.

Computer Science Dept., Università degli Studi di Torino, Corso Svizzera 185, 10149 Torino, Italy.

出版信息

Eur J Pharm Sci. 2014 Mar 12;53:50-4. doi: 10.1016/j.ejps.2013.12.007. Epub 2013 Dec 17.

Abstract

The role of hydrogen bond acidity, i.e., the ability of chemicals to act as hydrogen bond donors (HBD), is a crucial element in pharmaceutical sciences and medicinal chemistry. It has been shown that the difference between logP values (ΔlogP) obtained in two different biphasic systems is informative of the solutes HBD properties and thus useful in the prediction of drugs human fate. In this study, we collected from literature more than 200 experimental logPtol (the logarithm of the partition coefficient P in the toluene/water system) values along with their corresponding logPoct (the logarithm of the partition coefficient P in the octanol/water system) values. The dataset was processed using a purposely-built in-house software to remove molecules that are potentially able to form IMHBs. On the remaining structures the ΔlogPoct-tol (=logPoct - logPtol) have been calculated and correlated with 82 VolSurf+descriptors through a PLS model. Finally the Block Relevance (BR) analysis has been used to group the descriptors in six easy-to-interpret blocks and to show graphically the relevance of a certain block in the PLS model. BR analysis showed that the hydrogen bond donor (HBD) properties of the solutes mainly govern ΔlogPoct-tol. This supports the use of ΔlogPoct-tol to estimate HBD properties of solutes and its role in the intramolecular hydrogen bonding (IMHB) interpretation scheme recently reported in the literature.

摘要

氢键酸度的作用,即化学物质作为氢键供体(HBD)的能力,是药物科学和药物化学中的关键要素。研究表明,在两种不同的双相体系中获得的logP值之差(ΔlogP)能够反映溶质的HBD性质,因此有助于预测药物在人体内的命运。在本研究中,我们从文献中收集了200多个实验logPtol(甲苯/水体系中分配系数P的对数)值及其相应的logPoct(正辛醇/水体系中分配系数P的对数)值。使用专门构建的内部软件对数据集进行处理,以去除可能形成分子内氢键(IMHB)的分子。在剩余的结构上计算了ΔlogPoct-tol(=logPoct - logPtol),并通过偏最小二乘法(PLS)模型将其与82个VolSurf+描述符进行关联。最后,使用块相关性(BR)分析将描述符分组为六个易于解释的块,并以图形方式展示某个块在PLS模型中的相关性。BR分析表明,溶质的氢键供体(HBD)性质主要决定了ΔlogPoct-tol。这支持了使用ΔlogPoct-tol来估计溶质的HBD性质及其在文献中最近报道的分子内氢键(IMHB)解释方案中的作用。

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