Worldwide Medicinal Chemistry, Pfizer Global Research & Development, Pfizer, Inc., Groton, Connecticut 06340, USA.
J Med Chem. 2013 Jun 27;56(12):4870-9. doi: 10.1021/jm301850m. Epub 2013 Jun 12.
This study demonstrates that ΔlogP(oct-tol) (difference between logP(octanol) and logP(toluene)) describes compounds propensity to form intramolecular hydrogen bonds (IMHB) and may be considered a privileged molecular descriptor for use in drug discovery and for prediction of IMHB in drug candidates. We identified experimental protocols for acquiring reliable ΔlogP(oct-tol) values on a set of compounds representing IMHB motifs most prevalent in medicinal chemistry, mainly molecules capable of forming 6-, 7-member IMHB rings. Furthermore, computational ΔlogP(oct-tol) values obtained with COSMO-RS software provided a good estimate of experimental results and can be used prospectively to assess IMHB. The proposed interpretation method based on ΔlogP(oct-tol) data allowed categorization of the compounds into 2 groups: with high propensity to form IMHB and poor propensity or poor relevance of IMHB. The relative (1)H NMR chemical shift of an exchangeable proton was used to verify presence of IMHB and to validate the IMHB interpretation scheme.
本研究表明,ΔlogP(oct-tol)(辛醇和甲苯之间的 logP 差值)描述了化合物形成分子内氢键(IMHB)的倾向,可被视为药物发现中使用的一种有价值的分子描述符,也可用于预测候选药物中的 IMHB。我们确定了实验方案,可用于获取一组代表药物化学中最常见的 IMHB 基序的化合物的可靠 ΔlogP(oct-tol) 值,这些化合物主要是能够形成 6-、7-元 IMHB 环的分子。此外,使用 COSMO-RS 软件获得的计算 ΔlogP(oct-tol) 值可以很好地估计实验结果,并可用于前瞻性地评估 IMHB。基于 ΔlogP(oct-tol) 数据的建议解释方法允许将化合物分为 2 组:具有高形成 IMHB 倾向和低形成 IMHB 倾向或低相关性。可交换质子的相对 (1)H NMR 化学位移用于验证 IMHB 的存在,并验证 IMHB 解释方案。