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在一个患有共同性斜视的多代家系中进行的全基因组扫描支持复杂的遗传决定论。

A genome scan conducted in a multigenerational pedigree with convergent strabismus supports a complex genetic determinism.

作者信息

Georges Anouk, Cambisano Nadine, Ahariz Naïma, Karim Latifa, Georges Michel

机构信息

Department of Ophtalmology, Faculty of Medicine, University of Liège (CHU), Liège, Belgium.

Unit of Animal Genomics, GIGA-R & Faculty of Veterinary Medicine, University of Liège (B34), Liège, Belgium.

出版信息

PLoS One. 2013 Dec 23;8(12):e83574. doi: 10.1371/journal.pone.0083574. eCollection 2013.

Abstract

A genome-wide linkage scan was conducted in a Northern-European multigenerational pedigree with nine of 40 related members affected with concomitant strabismus. Twenty-seven members of the pedigree including all affected individuals were genotyped using a SNP array interrogating > 300,000 common SNPs. We conducted parametric and non-parametric linkage analyses assuming segregation of an autosomal dominant mutation, yet allowing for incomplete penetrance and phenocopies. We detected two chromosome regions with near-suggestive evidence for linkage, respectively on chromosomes 8 and 18. The chromosome 8 linkage implied a penetrance of 0.80 and a rate of phenocopy of 0.11, while the chromosome 18 linkage implied a penetrance of 0.64 and a rate of phenocopy of 0. Our analysis excludes a simple genetic determinism of strabismus in this pedigree.

摘要

在一个北欧多代家系中进行了全基因组连锁扫描,该家系40名相关成员中有9名患有伴发性斜视。使用一个检测超过30万个常见单核苷酸多态性(SNP)的SNP阵列对包括所有患病个体在内的27名家系成员进行了基因分型。我们进行了参数和非参数连锁分析,假设常染色体显性突变的分离,但允许不完全外显率和拟表型存在。我们分别在8号和18号染色体上检测到两个有接近提示性连锁证据的染色体区域。8号染色体的连锁表明外显率为0.80,拟表型率为0.11,而18号染色体的连锁表明外显率为0.64,拟表型率为0。我们的分析排除了该家系中斜视的简单遗传决定性因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04e0/3871668/5d3fb0e78fe7/pone.0083574.g001.jpg

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