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经典铁硫簇电子结构计算中的铁硫键共价性。

Iron-sulfur bond covalency from electronic structure calculations for classical iron-sulfur clusters.

机构信息

Department of Chemistry and Biochemistry, NAI Astrobiology Biogeocatalysis Research Center, Montana State University, Bozeman, Montana, 59717.

出版信息

J Comput Chem. 2014 Mar 15;35(7):540-52. doi: 10.1002/jcc.23518. Epub 2014 Jan 24.

DOI:10.1002/jcc.23518
PMID:24458434
Abstract

The covalent character of iron-sulfur bonds is a fundamental electronic structural feature for understanding the electronic and magnetic properties and the reactivity of biological and biomimetic iron-sulfur clusters. Conceptually, bond covalency obtained from X-ray absorption spectroscopy (XAS) can be directly related to orbital compositions from electronic structure calculations, providing a standard for evaluation of density functional theoretical methods. Typically, a combination of functional and basis set that optimally reproduces experimental bond covalency is chosen, but its dependence on the population analysis method is often neglected, despite its important role in deriving theoretical bond covalency. In this study of iron tetrathiolates, and classical [2Fe-2S] and [4Fe-4S] clusters with only thiolate ligands, we find that orbital compositions can vary significantly depending on whether they are derived from frontier orbitals, spin densities, or electron sharing indexes from "Átoms in Molecules" (ÁIM) theory. The benefits and limitations of Mulliken, Minimum Basis Set Mulliken, Natural, Coefficients-Squared, Hirshfeld, and AIM population analyses are described using ab initio wave function-based (QCISD) and experimental (S K-edge XAS) bond covalency. We find that the AIM theory coupled with a triple-ζ basis set and the hybrid functional B(5%HF)P86 gives the most reasonable electronic structure for the studied Fe-S clusters.

摘要

铁硫键的共价性质是理解生物和仿生铁硫簇的电子和磁性性质以及反应性的基本电子结构特征。从概念上讲,从 X 射线吸收光谱 (XAS) 获得的键共价性可以直接与电子结构计算的轨道组成相关联,为评估密度泛函理论方法提供了标准。通常,选择最佳地再现实验键共价性的功能和基组的组合,但往往忽略了其对群体分析方法的依赖性,尽管它在得出理论键共价性方面起着重要作用。在这项关于四硫代铁酸盐以及仅具有硫醇配体的经典 [2Fe-2S] 和 [4Fe-4S] 簇的研究中,我们发现轨道组成可以根据它们是源自前线轨道、自旋密度还是“分子中的原子”(ÁIM)理论的电子共享指数而有很大差异。使用从头算波函数 (QCISD) 和实验 (S K 边 XAS) 键共价性描述了 Mulliken、最小基组 Mulliken、自然、系数平方、Hirshfeld 和 AIM 群体分析的优缺点。我们发现,与三 ζ 基组和混合函数 B(5%HF)P86 结合的 AIM 理论为所研究的 Fe-S 簇提供了最合理的电子结构。

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