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1
Epigenetics, epistasis and epidemics.
Evol Med Public Health. 2013 Jan;2013(1):86-8. doi: 10.1093/emph/eot009. Epub 2013 Apr 22.
2
Patterns of Epistasis between beneficial mutations in an antibiotic resistance gene.
Mol Biol Evol. 2013 Aug;30(8):1779-87. doi: 10.1093/molbev/mst096. Epub 2013 May 15.
3
Positive epistasis drives the acquisition of multidrug resistance.
PLoS Genet. 2009 Jul;5(7):e1000578. doi: 10.1371/journal.pgen.1000578. Epub 2009 Jul 24.
4
Proteostasis Environment Shapes Higher-Order Epistasis Operating on Antibiotic Resistance.
Genetics. 2019 Jun;212(2):565-575. doi: 10.1534/genetics.119.302138. Epub 2019 Apr 23.
5
Epistasis and the Evolution of Antimicrobial Resistance.
Front Microbiol. 2017 Feb 17;8:246. doi: 10.3389/fmicb.2017.00246. eCollection 2017.
6
Pervasive sign epistasis between conjugative plasmids and drug-resistance chromosomal mutations.
PLoS Genet. 2011 Jul;7(7):e1002181. doi: 10.1371/journal.pgen.1002181. Epub 2011 Jul 28.
7
Epidemiology: Then and Now.
Am J Epidemiol. 2016 Mar 1;183(5):372-80. doi: 10.1093/aje/kwv158. Epub 2015 Oct 21.
8
A Two-Locus System with Strong Epistasis Underlies Rapid Parasite-Mediated Evolution of Host Resistance.
Mol Biol Evol. 2021 Apr 13;38(4):1512-1528. doi: 10.1093/molbev/msaa311.
9
Mechanistic causes of sign epistasis and its applications.
Front Genet. 2024 Feb 28;15:1366917. doi: 10.3389/fgene.2024.1366917. eCollection 2024.

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1
Collateral sensitivity and cross-resistance in six species of bacteria exposed to six classes of antibiotics.
Microbiol Spectr. 2025 Aug 5;13(8):e0098325. doi: 10.1128/spectrum.00983-25. Epub 2025 Jun 20.
2
Bacterial Subcellular Architecture, Structural Epistasis, and Antibiotic Resistance.
Biology (Basel). 2023 Apr 23;12(5):640. doi: 10.3390/biology12050640.
3
Evolutionary Pathways and Trajectories in Antibiotic Resistance.
Clin Microbiol Rev. 2021 Dec 15;34(4):e0005019. doi: 10.1128/CMR.00050-19. Epub 2021 Jun 30.
4
Waddington's Landscapes in the Bacterial World.
Front Microbiol. 2021 Jun 4;12:685080. doi: 10.3389/fmicb.2021.685080. eCollection 2021.
5
Convergent phenotypic evolution towards fosfomycin collateral sensitivity of Pseudomonas aeruginosa antibiotic-resistant mutants.
Microb Biotechnol. 2022 Feb;15(2):613-629. doi: 10.1111/1751-7915.13817. Epub 2021 May 7.
6
Epistatic control of intrinsic resistance by virulence genes in Listeria.
PLoS Genet. 2018 Sep 4;14(9):e1007525. doi: 10.1371/journal.pgen.1007525. eCollection 2018 Sep.
7
The advantage of being slow: The quasi-neutral contact process.
PLoS One. 2017 Aug 14;12(8):e0182672. doi: 10.1371/journal.pone.0182672. eCollection 2017.
9
Disparities in capreomycin resistance levels associated with the rrs A1401G mutation in clinical isolates of Mycobacterium tuberculosis.
Antimicrob Agents Chemother. 2015 Jan;59(1):444-9. doi: 10.1128/AAC.04438-14. Epub 2014 Nov 10.
10
Contribution of phenotypic heterogeneity to adaptive antibiotic resistance.
Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):355-60. doi: 10.1073/pnas.1316084111. Epub 2013 Dec 18.

本文引用的文献

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Epistasis between antibiotic resistance mutations drives the evolution of extensively drug-resistant tuberculosis.
Evol Med Public Health. 2013 Jan;2013(1):65-74. doi: 10.1093/emph/eot003. Epub 2013 Mar 8.
2
Antibiotic resistance shaping multi-level population biology of bacteria.
Front Microbiol. 2013 Mar 6;4:15. doi: 10.3389/fmicb.2013.00015. eCollection 2013.
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A theory of biological relativity: no privileged level of causation.
Interface Focus. 2012 Feb 6;2(1):55-64. doi: 10.1098/rsfs.2011.0067. Epub 2011 Nov 9.
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Epistasis as the primary factor in molecular evolution.
Nature. 2012 Oct 25;490(7421):535-8. doi: 10.1038/nature11510. Epub 2012 Oct 14.
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Organization principles in genetic interaction networks.
Adv Exp Med Biol. 2012;751:53-78. doi: 10.1007/978-1-4614-3567-9_3.
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The 2010 Garrod Lecture: the dimensions of evolution in antibiotic resistance: ex unibus plurum et ex pluribus unum.
J Antimicrob Chemother. 2011 Aug;66(8):1659-72. doi: 10.1093/jac/dkr214. Epub 2011 Jun 16.
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Public health microbiology, a challenge for Europe.
Clin Microbiol Infect. 2010 Feb;16(2):123-5. doi: 10.1111/j.1469-0691.2009.03126.x. Epub 2009 Nov 20.
8
Interplay in the selection of fluoroquinolone resistance and bacterial fitness.
PLoS Pathog. 2009 Aug;5(8):e1000541. doi: 10.1371/journal.ppat.1000541. Epub 2009 Aug 7.
9
Contribution of gene amplification to evolution of increased antibiotic resistance in Salmonella typhimurium.
Genetics. 2009 Aug;182(4):1183-95. doi: 10.1534/genetics.109.103028. Epub 2009 May 27.
10
Epigenetic inheritance based evolution of antibiotic resistance in bacteria.
BMC Evol Biol. 2008 Feb 18;8:52. doi: 10.1186/1471-2148-8-52.

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