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一种用于共振归属的快速核磁共振方法:应用于代谢组学。

A fast NMR method for resonance assignments: application to metabolomics.

作者信息

Pudakalakatti Shivanand M, Dubey Abhinav, Jaipuria Garima, Shubhashree U, Adiga Satish Kumar, Moskau Detlef, Atreya Hanudatta S

机构信息

NMR Research Centre, Indian Institute of Science, Bangalore, 560012, India.

出版信息

J Biomol NMR. 2014 Mar;58(3):165-73. doi: 10.1007/s10858-014-9814-6. Epub 2014 Feb 2.

Abstract

We present a new method for rapid NMR data acquisition and assignments applicable to unlabeled ((12)C) or (13)C-labeled biomolecules/organic molecules in general and metabolomics in particular. The method involves the acquisition of three two dimensional (2D) NMR spectra simultaneously using a dual receiver system. The three spectra, namely: (1) G-matrix Fourier transform (GFT) (3,2)D [(13)C, (1)H] HSQC-TOCSY, (2) 2D (1)H-(1)H TOCSY and (3) 2D (13)C-(1)H HETCOR are acquired in a single experiment and provide mutually complementary information to completely assign individual metabolites in a mixture. The GFT (3,2)D [(13)C, (1)H] HSQC-TOCSY provides 3D correlations in a reduced dimensionality manner facilitating high resolution and unambiguous assignments. The experiments were applied for complete (1)H and (13)C assignments of a mixture of 21 unlabeled metabolites corresponding to a medium used in assisted reproductive technology. Taken together, the experiments provide time gain of order of magnitudes compared to the conventional data acquisition methods and can be combined with other fast NMR techniques such as non-uniform sampling and covariance spectroscopy. This provides new avenues for using multiple receivers and projection NMR techniques for high-throughput approaches in metabolomics.

摘要

我们提出了一种新的快速核磁共振(NMR)数据采集与归属方法,该方法一般适用于未标记的(¹²C)或¹³C标记的生物分子/有机分子,尤其适用于代谢组学。该方法涉及使用双接收器系统同时采集三个二维(2D)NMR谱。这三个谱分别为:(1)G矩阵傅里叶变换(GFT)(3,2)D [¹³C,¹H] HSQC - TOCSY,(2)二维¹H - ¹H TOCSY和(3)二维¹³C - ¹H HETCOR,它们在一次实验中采集,并提供相互补充的信息以完全归属混合物中的各个代谢物。GFT(3,2)D [¹³C,¹H] HSQC - TOCSY以降维方式提供三维相关性,有助于实现高分辨率和明确的归属。这些实验应用于对21种未标记代谢物混合物进行完整的¹H和¹³C归属,该混合物对应于辅助生殖技术中使用的一种培养基。总体而言,与传统数据采集方法相比,这些实验可节省几个数量级的时间,并且可以与其他快速NMR技术(如非均匀采样和协方差光谱)相结合。这为在代谢组学的高通量方法中使用多个接收器和投影NMR技术提供了新途径。

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