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用于代谢组学和通量组学研究的快速二维 ALSOFAST-HSQC 实验:在金纳米颗粒处理的富含 C 的癌细胞模型中的应用。

Rapid two-dimensional ALSOFAST-HSQC experiment for metabolomics and fluxomics studies: application to a C-enriched cancer cell model treated with gold nanoparticles.

机构信息

Institut für Organische Chemie, Karlsruher Institut für Technologie (KIT), Fritz-Haber-Weg 6, 76131, Karlsruhe, Germany.

Institut für Biologische Grenzflächen 4 - Magnetische Resonanz, Karlsruher Institut für Technologie (KIT), Postfach 3640, 76021, Karlsruhe, Germany.

出版信息

Anal Bioanal Chem. 2018 Apr;410(11):2793-2804. doi: 10.1007/s00216-018-0961-6. Epub 2018 Feb 26.

DOI:10.1007/s00216-018-0961-6
PMID:29480388
Abstract

Isotope labeling enables the use of C-based metabolomics techniques with strongly improved resolution for a better identification of relevant metabolites and tracing of metabolic fluxes in cell and animal models, as required in fluxomics studies. However, even at high NMR-active isotope abundance, the acquisition of one-dimensional C and classical two-dimensional H,C-HSQC experiments remains time consuming. With the aim to provide a shorter, more efficient alternative, herein we explored the ALSOFAST-HSQC experiment with its rapid acquisition scheme for the analysis of C-labeled metabolites in complex biological mixtures. As an initial step, the parameters of the pulse sequence were optimized to take into account the specific characteristics of the complex samples. We then applied the fast two-dimensional experiment to study the effect of different kinds of antioxidant gold nanoparticles on a HeLa cancer cell model grown on C glucose-enriched medium. As a result, H,C-2D correlations could be obtained in a couple of seconds to few minutes, allowing a simple and reliable identification of various C-enriched metabolites and the determination of specific variations between the different sample groups. Thus, it was possible to monitor glucose metabolism in the cell model and study the antioxidant effect of the coated gold nanoparticles in detail. Finally, with an experiment time of only half an hour, highly resolved H,C-HSQC spectra using the ALSOFAST-HSQC pulse sequence were acquired, revealing the isotope-position-patterns of the corresponding C-nuclei from carbon multiplets. Graphical abstract Fast NMR applied to metabolomics and fluxomics studies with gold nanoparticles.

摘要

同位素标记使基于 C 的代谢组学技术得以使用,其分辨率得到了极大的提高,有利于更好地鉴定相关代谢物,并追踪细胞和动物模型中的代谢通量,这在通量组学研究中是必需的。然而,即使在高 NMR 活性同位素丰度下,一维 C 和经典二维 H,C-HSQC 实验的采集仍然很耗时。为了提供更短、更高效的替代方法,本文探索了使用 ALSOFAST-HSQC 实验及其快速采集方案来分析复杂生物混合物中标记的 C 代谢物。作为初步步骤,优化了脉冲序列的参数,以考虑复杂样品的特定特征。然后,我们将快速二维实验应用于研究不同种类的抗氧化金纳米粒子对在富含 C 葡萄糖的培养基中生长的 HeLa 癌细胞模型的影响。结果,在几秒钟到几分钟内可以获得 H,C-2D 相关谱,从而可以简单可靠地鉴定各种 C 富集代谢物,并确定不同样品组之间的特定变化。因此,可以监测细胞模型中的葡萄糖代谢,并详细研究涂层金纳米粒子的抗氧化作用。最后,使用仅半小时的实验时间,我们获得了使用 ALSOFAST-HSQC 脉冲序列的高分辨率 H,C-HSQC 光谱,揭示了相应 C 核的同位素位置模式来自碳多重峰。

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