深红伊鲁玛特菌YM16-304(T.)的全基因组序列

Complete genome sequence of Ilumatobacter coccineum YM16-304(T.).

作者信息

Fujinami Shun, Takarada Hiromi, Kasai Hiroaki, Sekine Mitsuo, Omata Seiha, Harada Takeshi, Fukai Rieko, Hosoyama Akira, Horikawa Hiroshi, Kato Yumiko, Nakazawa Hidekazu, Fujita Nobuyuki

机构信息

Biological Resource Center, National Institute of Technology and Evaluation, Shibuya, Tokyo, Japan ; Bio-Nano Electronics Research Centre, Toyo University, 2100 Kujirai, Kawagoe Saitama, Japan.

Biological Resource Center, National Institute of Technology and Evaluation, Shibuya, Tokyo, Japan.

出版信息

Stand Genomic Sci. 2013 Jul 30;8(3):430-40. doi: 10.4056/sigs.4007734.

DOI:10.4056/sigs.4007734

PMID:24501628

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3910706/

Abstract

Ilumatobacter coccineum YM16-304(T) (=NBRC 103263(T)) is a novel marine actinobacterium isolated from a sand sample collected at a beach in Shimane Prefecture, Japan. Strain YM16-304(T) is the type strain of the species. Phylogenetically, strain YM16-304(T) is close to Ilumatobacter nonamiense YM16-303(T) (=NBRC 109120(T)), Ilumatobacter fluminis YM22-133(T) and some uncultured bacteria including putative marine sponge symbionts. Whole genome sequence of these species has not been reported. Here we report the complete genome sequence of strain YM16-304(T). The 4,830,181 bp chromosome was predicted to encode a total of 4,291 protein-coding genes.

摘要

红球发光杆菌YM16 - 304(T)（=NBRC 103263(T)）是从日本岛根县一个海滩采集的沙子样本中分离出的一种新型海洋放线菌。菌株YM16 - 304(T)是该物种的模式菌株。在系统发育上，菌株YM16 - 304(T)与非南发光杆菌YM16 - 303(T)（=NBRC 109120(T)）、河流发光杆菌YM22 - 133(T)以及一些未培养细菌（包括假定的海洋海绵共生菌）关系密切。这些物种的全基因组序列尚未见报道。在此，我们报告菌株YM16 - 304(T)的完整基因组序列。该4,830,181 bp的染色体预计共编码4,291个蛋白质编码基因。