• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用相位恢复光瞳函数的三维单分子定位

Three dimensional single molecule localization using a phase retrieved pupil function.

作者信息

Liu Sheng, Kromann Emil B, Krueger Wesley D, Bewersdorf Joerg, Lidke Keith A

出版信息

Opt Express. 2013 Dec 2;21(24):29462-87. doi: 10.1364/OE.21.029462.

DOI:10.1364/OE.21.029462
PMID:24514501
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3867195/
Abstract

Localization-based superresolution imaging is dependent on finding the positions of individual fluorophores in a sample by fitting the observed single-molecule intensity pattern to the microscope point spread function (PSF). For three-dimensional imaging, system-specific aberrations of the optical system can lead to inaccurate localizations when the PSF model does not account for these aberrations. Here we describe the use of phase-retrieved pupil functions to generate a more accurate PSF and therefore more accurate 3D localizations. The complex-valued pupil function contains information about the system-specific aberrations and can thus be used to generate the PSF for arbitrary defocus. Further, it can be modified to include depth dependent aberrations. We describe the phase retrieval process, the method for including depth dependent aberrations, and a fast fitting algorithm using graphics processing units. The superior localization accuracy of the pupil function generated PSF is demonstrated with dual focal plane 3D superresolution imaging of biological structures.

摘要

基于定位的超分辨率成像依赖于通过将观察到的单分子强度模式拟合到显微镜点扩散函数(PSF)来找到样品中单个荧光团的位置。对于三维成像,当PSF模型没有考虑光学系统的特定系统像差时,光学系统的特定系统像差会导致定位不准确。在这里,我们描述了使用相位恢复的光瞳函数来生成更准确的PSF,从而实现更准确的三维定位。复值光瞳函数包含有关特定系统像差的信息,因此可用于生成任意离焦的PSF。此外,它可以被修改以包括深度相关的像差。我们描述了相位恢复过程、包含深度相关像差的方法以及使用图形处理单元的快速拟合算法。通过对生物结构的双焦平面三维超分辨率成像,证明了光瞳函数生成的PSF具有更高的定位精度。

相似文献

1
Three dimensional single molecule localization using a phase retrieved pupil function.使用相位恢复光瞳函数的三维单分子定位
Opt Express. 2013 Dec 2;21(24):29462-87. doi: 10.1364/OE.21.029462.
2
K-factor image deshadowing for three-dimensional fluorescence microscopy.用于三维荧光显微镜的K因子图像去阴影
Sci Rep. 2015 Sep 3;5:13724. doi: 10.1038/srep13724.
3
Correction of depth-dependent aberrations in 3D single-molecule localization and super-resolution microscopy.三维单分子定位和超分辨率显微镜中深度相关像差的校正。
Opt Lett. 2014 Jan 15;39(2):275-8. doi: 10.1364/OL.39.000275.
4
Scalar-function-driven editing on point set surfaces.点集曲面上的标量函数驱动编辑
IEEE Comput Graph Appl. 2004 Jul-Aug;24(4):43-52. doi: 10.1109/mcg.2004.16.
5
Flexible point-based rendering on mobile devices.移动设备上的灵活基于点的渲染。
IEEE Comput Graph Appl. 2004 Jul-Aug;24(4):57-63. doi: 10.1109/mcg.2004.5.
6
Normal improvement for point rendering.点渲染的正常改进。
IEEE Comput Graph Appl. 2004 Jul-Aug;24(4):53-6. doi: 10.1109/mcg.2004.14.
7
Three-dimensional superresolution by three-zone complex pupil filters.采用三区复合光瞳滤波器实现三维超分辨率
J Opt Soc Am A Opt Image Sci Vis. 2005 Feb;22(2):272-7. doi: 10.1364/josaa.22.000272.
8
Comments on "Plane-based optimization for 3D object reconstruction from single line drawings".关于《基于平面的单线条图三维物体重建优化》的评论
IEEE Trans Pattern Anal Mach Intell. 2009 Sep;31(9):1723-5; discussion 1726-8. doi: 10.1109/TPAMI.2008.262.
9
Correcting bulk in-plane motion artifacts in MRI using the point spread function.利用点扩散函数校正磁共振成像中的体平面运动伪影。
IEEE Trans Med Imaging. 2005 Sep;24(9):1170-6. doi: 10.1109/TMI.2005.853235.
10
Aberration-free superresolution imaging via binary speckle pattern encoding and processing.
J Opt Soc Am A Opt Image Sci Vis. 2007 Apr;24(4):1003-10. doi: 10.1364/josaa.24.001003.

引用本文的文献

1
Enhanced supercritical angle localization microscopy through point spread function modeling.通过点扩散函数建模增强超临界角定位显微镜技术
Biomed Opt Express. 2025 Jul 10;16(8):3139-3155. doi: 10.1364/BOE.563592. eCollection 2025 Aug 1.
2
Simultaneous particle tracking, phase retrieval and point spread function reconstruction.同步粒子跟踪、相位恢复和点扩散函数重建。
bioRxiv. 2025 May 6:2025.05.02.651986. doi: 10.1101/2025.05.02.651986.
3
Model-free machine learning-based 3D single molecule localisation microscopy.基于无模型机器学习的三维单分子定位显微镜技术
J Microsc. 2025 Jul;299(1):77-87. doi: 10.1111/jmi.13420. Epub 2025 May 8.
4
Joint estimation of point spread function and molecule positions in SMLM informed from multiple planes.基于多平面信息的单分子定位显微镜中点扩散函数和分子位置的联合估计
Biomed Opt Express. 2025 Mar 4;16(4):1310-1326. doi: 10.1364/BOE.551278. eCollection 2025 Apr 1.
5
Measurement precision bounds on aberrated single-molecule emission patterns.像差单分子发射模式的测量精度界限。
Opt Express. 2024 Aug 26;32(18):31431-31447. doi: 10.1364/OE.527267.
6
Universal inverse modeling of point spread functions for SMLM localization and microscope characterization.用于 SMLM 定位和显微镜特性分析的点扩散函数的通用逆建模。
Nat Methods. 2024 Jun;21(6):1082-1093. doi: 10.1038/s41592-024-02282-x. Epub 2024 Jun 3.
7
Universal inverse modelling of point spread functions for SMLM localization and microscope characterization.用于超分辨显微镜定位和显微镜表征的点扩散函数通用逆建模
bioRxiv. 2023 Oct 26:2023.10.26.564064. doi: 10.1101/2023.10.26.564064.
8
Adaptive optics in super-resolution microscopy.超分辨率显微镜中的自适应光学技术。
Biophys Rep. 2021 Aug 31;7(4):267-279. doi: 10.52601/bpr.2021.210015.
9
Tolerance to aberration and misalignment in a two-point-resolving image inversion interferometer.两点分辨像倒易干涉仪中的像差和失调容限。
Opt Express. 2023 May 8;31(10):16393-16405. doi: 10.1364/OE.487808.
10
Adaptive optics for optical microscopy [Invited].用于光学显微镜的自适应光学技术[特邀报告]
Biomed Opt Express. 2023 Mar 29;14(4):1732-1756. doi: 10.1364/BOE.479886. eCollection 2023 Apr 1.

本文引用的文献

1
Phase-retrieved pupil function and coherent transfer function in confocal microscopy.共聚焦显微镜中的相息瞳函数和相干传递函数。
J Microsc. 2013 Jul;251(1):99-107. doi: 10.1111/jmi.12050. Epub 2013 May 20.
2
Measuring image resolution in optical nanoscopy.光学纳米显微镜中的图像分辨率测量。
Nat Methods. 2013 Jun;10(6):557-62. doi: 10.1038/nmeth.2448. Epub 2013 Apr 28.
3
Evanescent excitation and emission in fluorescence microscopy.荧光显微镜中的瞬态激发和发射。
Biophys J. 2013 Apr 2;104(7):1401-9. doi: 10.1016/j.bpj.2013.02.044.
4
3-D PSF fitting for fluorescence microscopy: implementation and localization application.三维 PSF 拟合用于荧光显微镜:实现与定位应用。
J Microsc. 2013 Jan;249(1):13-25. doi: 10.1111/j.1365-2818.2012.03675.x. Epub 2012 Nov 5.
5
Quantitative pupil analysis in stimulated emission depletion microscopy using phase retrieval.利用相位恢复技术对受激发射损耗显微镜中的定量瞳孔分析。
Opt Lett. 2012 Jun 1;37(11):1805-7. doi: 10.1364/OL.37.001805.
6
Fluorescence excitation and imaging of single molecules near dielectric-coated and bare surfaces: a theoretical study.近介电涂层和裸表面的单分子荧光激发和成像:理论研究。
J Microsc. 2012 Aug;247(2):147-60. doi: 10.1111/j.1365-2818.2012.03625.x. Epub 2012 May 21.
7
Optimal 3D single-molecule localization for superresolution microscopy with aberrations and engineered point spread functions.具有像差和工程点扩散函数的超分辨率显微镜的最佳 3D 单分子定位。
Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):675-9. doi: 10.1073/pnas.1109011108. Epub 2011 Dec 30.
8
Imaging properties of supercritical angle fluorescence optics.超临界角荧光光学器件的成像特性
Opt Express. 2011 Apr 25;19(9):8011-8. doi: 10.1364/OE.19.008011.
9
Simultaneous multiple-emitter fitting for single molecule super-resolution imaging.用于单分子超分辨率成像的同时多发射器拟合
Biomed Opt Express. 2011 Apr 29;2(5):1377-93. doi: 10.1364/BOE.2.001377.
10
Confined activation and subdiffractive localization enables whole-cell PALM with genetically expressed probes.限制激活和亚扩散定位使具有遗传表达探针的全细胞 PALM 成为可能。
Nat Methods. 2011 Apr;8(4):327-33. doi: 10.1038/nmeth.1571. Epub 2011 Feb 13.