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嗜肺军团菌效应蛋白DrrA/SidM特异性募集至PI(4)P膜的结构基础

Structural basis for PI(4)P-specific membrane recruitment of the Legionella pneumophila effector DrrA/SidM.

作者信息

Del Campo Claudia M, Mishra Ashwini K, Wang Yu-Hsiu, Roy Craig R, Janmey Paul A, Lambright David G

机构信息

Program in Molecular Medicine and Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

Institute for Medicine and Engineering and Department of Chemistry, University of Pennsylvania, Philadelphia, PA 19104, USA.

出版信息

Structure. 2014 Mar 4;22(3):397-408. doi: 10.1016/j.str.2013.12.018. Epub 2014 Feb 13.

DOI:10.1016/j.str.2013.12.018
PMID:24530282
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3974903/
Abstract

Recruitment of the Legionella pneumophila effector DrrA to the Legionella-containing vacuole, where it activates and AMPylates Rab1, is mediated by a P4M domain that binds phosphatidylinositol 4-phosphate [PI(4)P] with high affinity and specificity. Despite the importance of PI(4)P in Golgi trafficking and its manipulation by pathogens, the structural bases for PI(4)P-dependent membrane recruitment remain poorly defined. Here, we determined the crystal structure of a DrrA fragment including the P4M domain in complex with dibutyl PI(4)P and investigated the determinants of phosphoinositide recognition and membrane targeting. Headgroup recognition involves an elaborate network of direct and water-mediated interactions with basic and polar residues in the context of a deep, constrictive binding pocket. An adjacent hydrophobic helical element packs against the acyl chains and inserts robustly into PI(4)P-containing monolayers. The structural, biochemical, and biophysical data reported here support a detailed structural mechanism for PI(4)P-dependent membrane targeting by DrrA.

摘要

嗜肺军团菌效应蛋白DrrA被招募到含军团菌的液泡中,在那里它激活Rab1并使其腺苷酸化,这一过程由一个P4M结构域介导,该结构域能以高亲和力和特异性结合磷脂酰肌醇4-磷酸[PI(4)P]。尽管PI(4)P在高尔基体运输中很重要且会被病原体操纵,但其依赖PI(4)P的膜招募的结构基础仍不清楚。在这里,我们确定了一个包含P4M结构域的DrrA片段与二丁基PI(4)P复合物的晶体结构,并研究了磷酸肌醇识别和膜靶向的决定因素。头部基团识别涉及在一个深的、狭窄的结合口袋中与碱性和极性残基的直接和水介导相互作用的复杂网络。一个相邻的疏水螺旋元件靠在酰基链上,并牢固地插入含PI(4)P的单层膜中。本文报道的结构、生化和生物物理数据支持了DrrA依赖PI(4)P的膜靶向的详细结构机制。

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本文引用的文献

1
Structural basis for substrate recognition by a unique Legionella phosphoinositide phosphatase.独特军团菌磷酸肌醇磷酸酶的底物识别结构基础。
Proc Natl Acad Sci U S A. 2012 Aug 21;109(34):13567-72. doi: 10.1073/pnas.1207903109. Epub 2012 Aug 7.
2
Characterization of enzymes from Legionella pneumophila involved in reversible adenylylation of Rab1 protein.鉴定与军团菌属肺炎嗜肺军团菌 Rab1 蛋白可逆腺苷酰化有关的酶。
J Biol Chem. 2012 Oct 12;287(42):35036-35046. doi: 10.1074/jbc.M112.396861. Epub 2012 Aug 7.
3
PI4P and PI(4,5)P2 are essential but independent lipid determinants of membrane identity.PI4P 和 PI(4,5)P2 是膜特性的必需但独立的脂质决定因素。
Science. 2012 Aug 10;337(6095):727-30. doi: 10.1126/science.1222483. Epub 2012 Jun 21.
4
The taming of a Rab GTPase by Legionella pneumophila.嗜肺军团菌对Rab GTP酶的驯化
Small GTPases. 2012 Jan-Mar;3(1):28-33. doi: 10.4161/sgtp.18704.
5
Influence of the physical state of phospholipid monolayers on protein binding.磷脂单分子层物理状态对蛋白质结合的影响。
Langmuir. 2012 Jun 26;28(25):9680-8. doi: 10.1021/la301135z. Epub 2012 Jun 11.
6
Regulation of the electric charge in phosphatidic acid domains.磷脂酸域中电荷的调节。
J Phys Chem B. 2012 Jun 21;116(24):7213-20. doi: 10.1021/jp303840a. Epub 2012 Jun 6.
7
Secretive bacterial pathogens and the secretory pathway.隐秘的细菌病原体和分泌途径。
Traffic. 2012 Sep;13(9):1187-97. doi: 10.1111/j.1600-0854.2012.01344.x. Epub 2012 Mar 13.
8
Divalent cation-induced cluster formation by polyphosphoinositides in model membranes.二价阳离子诱导模型膜中多磷酸肌醇的簇形成。
J Am Chem Soc. 2012 Feb 22;134(7):3387-95. doi: 10.1021/ja208640t. Epub 2012 Feb 10.
9
The Legionella pneumophila effector DrrA is sufficient to stimulate SNARE-dependent membrane fusion.嗜肺军团菌效应蛋白 DrrA 足以刺激 SNARE 依赖性膜融合。
Cell Host Microbe. 2012 Jan 19;11(1):46-57. doi: 10.1016/j.chom.2011.11.009.
10
Conditional peripheral membrane proteins: facing up to limited specificity.条件性外周膜蛋白:应对有限特异性。
Structure. 2012 Jan 11;20(1):15-27. doi: 10.1016/j.str.2011.11.012. Epub 2011 Dec 21.