Seo Joonbae, Ottesen Eric W, Singh Ravindra N
Department of Biomedical Sciences, College of Veterinary Medicine, Iowa State University, Ames, IA, USA.
Methods Mol Biol. 2014;1126:271-83. doi: 10.1007/978-1-62703-980-2_20.
The dynamic process of pre-mRNA splicing is regulated by combinatorial control exerted by overlapping cis-elements that are unique to every exon and its flanking intronic sequences. Splicing cis-elements are usually 4-8-nucleotide-long linear motifs that furnish interaction sites for specific proteins. Secondary and higher-order RNA structures exert an additional layer of control by providing accessibility to cis-elements. Antisense oligonucleotides (ASOs) that block splicing cis-elements and/or affect RNA structure have been shown to modulate alternative splicing in vivo. Consistently, ASO-based strategies have emerged as a powerful tool for therapeutic manipulation of aberrant splicing in pathological conditions. Here we describe the application of an ASO-based approach for the enhanced production of the full-length mRNA of SMN2 in spinal muscular atrophy patient cells.
前体mRNA剪接的动态过程受到重叠顺式元件组合控制的调节,这些元件对于每个外显子及其侧翼内含子序列而言都是独特的。剪接顺式元件通常是4至8个核苷酸长的线性基序,为特定蛋白质提供相互作用位点。二级及更高级别的RNA结构通过提供对顺式元件的可及性来施加额外的控制层。已证明可阻断剪接顺式元件和/或影响RNA结构的反义寡核苷酸(ASO)可在体内调节可变剪接。同样,基于ASO的策略已成为在病理条件下对异常剪接进行治疗性操纵的强大工具。在此,我们描述了一种基于ASO的方法在脊髓性肌萎缩症患者细胞中增强SMN2全长mRNA产生的应用。