• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

密码子优化基因在微生物系统中的表达:当前的工业应用与展望

Expression of codon optimized genes in microbial systems: current industrial applications and perspectives.

作者信息

Elena Claudia, Ravasi Pablo, Castelli María E, Peirú Salvador, Menzella Hugo G

机构信息

Genetic Engineering and Fermentation Technology, Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario-Conicet Rosario, Argentina.

出版信息

Front Microbiol. 2014 Feb 4;5:21. doi: 10.3389/fmicb.2014.00021. eCollection 2014.

DOI:10.3389/fmicb.2014.00021
PMID:24550894
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3912506/
Abstract

The efficient production of functional proteins in heterologous hosts is one of the major bases of modern biotechnology. Unfortunately, many genes are difficult to express outside their original context. Due to their apparent "silent" nature, synonymous codon substitutions have long been thought to be trivial. In recent years, this dogma has been refuted by evidence that codon replacement can have a significant impact on gene expression levels and protein folding. In the past decade, considerable advances in the speed and cost of gene synthesis have facilitated the complete redesign of entire gene sequences, dramatically improving the likelihood of high protein expression. This technology significantly impacts the economic feasibility of microbial-based biotechnological processes by, for example, increasing the volumetric productivities of recombinant proteins or facilitating the redesign of novel biosynthetic routes for the production of metabolites. This review discusses the current applications of this technology, particularly those regarding the production of small molecules and industrially relevant recombinant enzymes. Suggestions for future research and potential uses are provided as well.

摘要

在异源宿主中高效生产功能蛋白是现代生物技术的主要基础之一。不幸的是,许多基因在其原始环境之外很难表达。由于其明显的“沉默”性质,同义密码子替换长期以来一直被认为是微不足道的。近年来,这一教条已被证据反驳,即密码子替换可对基因表达水平和蛋白质折叠产生重大影响。在过去十年中,基因合成速度和成本方面的显著进展促进了整个基因序列的完全重新设计,极大地提高了高蛋白表达的可能性。例如,通过提高重组蛋白的体积生产力或促进用于生产代谢物的新型生物合成途径的重新设计,该技术显著影响基于微生物的生物技术过程的经济可行性。本综述讨论了该技术的当前应用,特别是那些与小分子和工业相关重组酶生产有关的应用。还提供了未来研究和潜在用途的建议。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf13/3912506/8a04d9c04fda/fmicb-05-00021-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf13/3912506/8a04d9c04fda/fmicb-05-00021-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf13/3912506/8a04d9c04fda/fmicb-05-00021-g001.jpg

相似文献

1
Expression of codon optimized genes in microbial systems: current industrial applications and perspectives.密码子优化基因在微生物系统中的表达:当前的工业应用与展望
Front Microbiol. 2014 Feb 4;5:21. doi: 10.3389/fmicb.2014.00021. eCollection 2014.
2
Codon bias and heterologous protein expression.密码子偏好性与异源蛋白表达
Trends Biotechnol. 2004 Jul;22(7):346-53. doi: 10.1016/j.tibtech.2004.04.006.
3
Optimizing scaleup yield for protein production: Computationally Optimized DNA Assembly (CODA) and Translation Engineering.优化蛋白质生产的放大产量:计算优化DNA组装(CODA)和翻译工程。
Biotechnol Annu Rev. 2007;13:27-42. doi: 10.1016/S1387-2656(07)13002-7.
4
A particular silent codon exchange in a recombinant gene greatly influences host cell metabolic activity.重组基因中特定的沉默密码子交换极大地影响宿主细胞的代谢活性。
Microb Cell Fact. 2015 Oct 5;14:156. doi: 10.1186/s12934-015-0348-8.
5
Recent advances in systems and synthetic biology approaches for developing novel cell-factories in non-conventional yeasts.近年来,在系统和合成生物学方法方面的进展为开发非传统酵母中的新型细胞工厂提供了可能。
Biotechnol Adv. 2021 Mar-Apr;47:107695. doi: 10.1016/j.biotechadv.2021.107695. Epub 2021 Jan 16.
6
Synthetic gene design-The rationale for codon optimization and implications for molecular pharming in plants.合成基因设计——密码子优化的原理及其对植物分子制药的影响。
Biotechnol Bioeng. 2017 Mar;114(3):492-502. doi: 10.1002/bit.26183. Epub 2016 Dec 15.
7
Exploring codon context bias for synthetic gene design of a thermostable invertase in Escherichia coli.探索用于大肠杆菌中热稳定转化酶合成基因设计的密码子上下文偏好性。
Enzyme Microb Technol. 2015 Jul-Aug;75-76:57-63. doi: 10.1016/j.enzmictec.2015.04.008. Epub 2015 May 1.
8
Enhanced expression of codon optimized interferon gamma in CHO cells.优化密码子的干扰素 γ 在 CHO 细胞中的增强表达。
J Biotechnol. 2013 Sep 10;167(3):326-33. doi: 10.1016/j.jbiotec.2013.07.011. Epub 2013 Jul 19.
9
Microalgal Enzymes with Biotechnological Applications.微藻酶与生物技术应用。
Mar Drugs. 2019 Aug 5;17(8):459. doi: 10.3390/md17080459.
10
A computational framework for the design of optimal protein synthesis.用于设计最优蛋白质合成的计算框架。
Biotechnol Bioeng. 2012 Aug;109(8):2127-33. doi: 10.1002/bit.24463. Epub 2012 Feb 24.

引用本文的文献

1
Why AGG is associated with high transgene output: passenger effects and their implications for transgene design.为何AGG与高转基因产量相关:过客效应及其对转基因设计的影响。
NAR Genom Bioinform. 2025 Jun 19;7(2):lqaf086. doi: 10.1093/nargab/lqaf086. eCollection 2025 Jun.
2
Plant-Derived UDP-Glycosyltransferases for Glycosylation-Mediated Detoxification of Deoxynivalenol: Enzyme Discovery, Characterization, and In Vivo Resistance Assessment.用于脱氧雪腐镰刀菌烯醇糖基化介导解毒的植物源UDP-糖基转移酶:酶的发现、表征及体内抗性评估
Toxins (Basel). 2025 Mar 22;17(4):153. doi: 10.3390/toxins17040153.
3
Comparative Analysis of Codon Optimization Tools: Advancing toward a Multi-Criteria Framework for Synthetic Gene Design.

本文引用的文献

1
A recombinant multiepitope protein for hepatitis B diagnosis.用于乙型肝炎诊断的重组多表位蛋白。
Biomed Res Int. 2013;2013:148317. doi: 10.1155/2013/148317. Epub 2013 Nov 5.
2
Enzymatic hydrolysis of steryl glucosides, major contaminants of vegetable oil-derived biodiesel.植物油衍生生物柴油的主要污染物甾醇糖苷的酶促水解
Appl Microbiol Biotechnol. 2014 May;98(9):4033-40. doi: 10.1007/s00253-013-5345-4. Epub 2013 Nov 22.
3
Synthetic core promoters for Pichia pastoris.用于毕赤酵母的合成核心启动子。
密码子优化工具的比较分析:迈向合成基因设计的多标准框架
J Microbiol Biotechnol. 2025 Apr 10;35:e2411066. doi: 10.4014/jmb.2411.11066.
4
biosynthesis of 4,6-dihydroxycoumarin in .4,6-二羟基香豆素在……中的生物合成
Green Chem. 2025 Feb 13;27(11):3064-3076. doi: 10.1039/d4gc05694a. eCollection 2025 Mar 10.
5
Comparative Analysis of Codon Usage Bias in Six Genomes.六个基因组密码子使用偏性的比较分析。
Int J Mol Sci. 2024 Aug 1;25(15):8398. doi: 10.3390/ijms25158398.
6
Construction of Pseudomonas aeruginosa SDK-6 with synthetic lipase gene cassette and optimization of different parameters using response surface methodology for over-expression of recombinant lipase.利用响应面法构建具有合成脂肪酶基因盒的铜绿假单胞菌 SDK-6,并优化不同参数以过表达重组脂肪酶。
Folia Microbiol (Praha). 2024 Dec;69(6):1279-1290. doi: 10.1007/s12223-024-01167-y. Epub 2024 May 3.
7
Unravelling and reconstructing the biosynthetic pathway of bergenin.解析和重建原儿茶酸的生物合成途径。
Nat Commun. 2024 Apr 26;15(1):3539. doi: 10.1038/s41467-024-47502-2.
8
Tobacco Plant: A Novel and Promising Heterologous Bioreactor for the Production of Recombinant Bovine Chymosin.烟草植物:一种新型且有前途的用于生产重组牛凝乳酶的异源生物反应器。
Mol Biotechnol. 2024 Sep;66(9):2595-2605. doi: 10.1007/s12033-023-01043-z. Epub 2024 Jan 20.
9
Codon optimization of a gene encoding DNA polymerase from Pyrococcus furiosus and its expression in Escherichia coli.嗜热栖热菌DNA聚合酶编码基因的密码子优化及其在大肠杆菌中的表达。
J Genet Eng Biotechnol. 2023 Nov 21;21(1):129. doi: 10.1186/s43141-023-00605-7.
10
An exploratory in silico comparison of open-source codon harmonization tools.开源密码子优化工具的探索性计算机比较。
Microb Cell Fact. 2023 Nov 6;22(1):227. doi: 10.1186/s12934-023-02230-y.
ACS Synth Biol. 2014 Mar 21;3(3):188-91. doi: 10.1021/sb400091p. Epub 2013 Nov 4.
4
Recombinant approaches to large polyketide molecules as potential drugs.将大型聚酮化合物分子作为潜在药物的重组方法。
Drug Discov Today Technol. 2010 Summer;7(2):e95-e146. doi: 10.1016/j.ddtec.2010.10.002.
5
Causes and effects of N-terminal codon bias in bacterial genes.细菌基因 N 末端密码子偏好性的原因和影响。
Science. 2013 Oct 25;342(6157):475-9. doi: 10.1126/science.1241934. Epub 2013 Sep 26.
6
[Construction of synthetic promoters for Escherichia coli and application in the biosynthesis of cis,cis-muconic acid].[用于大肠杆菌的合成启动子构建及其在顺,顺-粘康酸生物合成中的应用]
Sheng Wu Gong Cheng Xue Bao. 2013 Jun;29(6):760-71.
7
Composability of regulatory sequences controlling transcription and translation in Escherichia coli.调控序列在大肠杆菌转录和翻译中的可组合性。
Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):14024-9. doi: 10.1073/pnas.1301301110. Epub 2013 Aug 7.
8
Advances in microalgae engineering and synthetic biology applications for biofuel production.微藻工程和合成生物学在生物燃料生产中的应用进展。
Curr Opin Chem Biol. 2013 Jun;17(3):489-95. doi: 10.1016/j.cbpa.2013.03.038. Epub 2013 May 16.
9
Isolation of fully synthetic promoters for high-level gene expression in Corynebacterium glutamicum.在谷氨酸棒杆菌中高效表达基因的完全合成启动子的分离。
Biotechnol Bioeng. 2013 Nov;110(11):2959-69. doi: 10.1002/bit.24954. Epub 2013 Jun 3.
10
High-level semi-synthetic production of the potent antimalarial artemisinin.高效半合成制备强效抗疟药物青蒿素。
Nature. 2013 Apr 25;496(7446):528-32. doi: 10.1038/nature12051. Epub 2013 Apr 10.