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DNA单链和双链中光激发的计算建模。

Computational modeling of photoexcitation in DNA single and double strands.

作者信息

Lu You, Lan Zhenggang, Thiel Walter

机构信息

Scientific Computing and Modeling NV, Vrije Universiteit, De Boelelaan 1083, 1081HV, Amsterdam, The Netherlands.

出版信息

Top Curr Chem. 2015;356:89-122. doi: 10.1007/128_2014_533.

Abstract

The photoexcitation of DNA strands triggers extremely complex photoinduced processes, which cannot be understood solely on the basis of the behavior of the nucleobase building blocks. Decisive factors in DNA oligomers and polymers include collective electronic effects, excitonic coupling, hydrogen-bonding interactions, local steric hindrance, charge transfer, and environmental and solvent effects. This chapter surveys recent theoretical and computational efforts to model real-world excited-state DNA strands using a variety of established and emerging theoretical methods. One central issue is the role of localized vs delocalized excitations and the extent to which they determine the nature and the temporal evolution of the initial photoexcitation in DNA strands.

摘要

DNA链的光激发会引发极其复杂的光诱导过程,仅基于核碱基构建单元的行为无法理解这些过程。DNA寡聚物和聚合物中的决定性因素包括集体电子效应、激子耦合、氢键相互作用、局部空间位阻、电荷转移以及环境和溶剂效应。本章概述了近期使用各种已确立和新兴的理论方法对真实世界中激发态DNA链进行建模的理论和计算工作。一个核心问题是局域激发与离域激发的作用,以及它们在多大程度上决定了DNA链中初始光激发的性质和时间演化。

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