Brown Mark V, Ostrowski Martin, Grzymski Joseph J, Lauro Federico M
School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, Australia; Evolution and Ecology Research Center, University of New South Wales, Sydney, Australia.
Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia.
Mar Genomics. 2014 Jun;15:17-28. doi: 10.1016/j.margen.2014.03.002. Epub 2014 Mar 21.
Marine microbial communities provide much of the energy upon which all higher trophic levels depend, particularly in open-ocean and oligotrophic systems, and play a pivotal role in biogeochemical cycling. How and why species are distributed in the global oceans, and whether net ecosystem function can be accurately predicted from community composition are fundamental questions for marine scientists. Many of the most abundant clades of marine bacteria, including the Prochlorococcus, Synechococcus, SAR11, SAR86 and Roseobacter, have a very broad, if not a cosmopolitan distribution. However this is not reflected in an underlying genetic identity. Rather, widespread distribution in these organisms is achieved by the existence of closely related but discrete ecotypes that display niche adaptations. Closely related ecotypes display specific nutritional or energy generating mechanisms and are adapted to different physical parameters including temperature, salinity, and hydrostatic pressure. Furthermore, biotic phenomena such as selective grazing and viral loss contribute to the success or failure of ecotypes allowing some to compete effectively in particular marine provinces but not in others. An additional layer of complexity is added by ocean currents and hydrodynamic specificity of water body masses that bound microbial dispersal and immigration. These vary in space and time with respect to intensity and direction, making the definition of large biogeographic provinces problematic. A deterministic theory aimed at understanding how all these factors shape microbial life in the oceans can only proceed through analysis of microbial traits, rather than pure phylogenetic assessments. Trait based approaches seek mechanistic explanations for the observed temporal and spatial patterns. This review will present successful recent advances in phylogenetic and trait based biogeographic analyses in some of the most abundant marine taxa.
海洋微生物群落提供了所有更高营养级所依赖的大部分能量,特别是在开阔海洋和贫营养系统中,并且在生物地球化学循环中发挥着关键作用。物种在全球海洋中的分布方式和原因,以及能否从群落组成准确预测生态系统净功能,是海洋科学家面临的基本问题。许多最丰富的海洋细菌类群,包括原绿球藻、聚球藻、SAR11、SAR86和玫瑰杆菌属,即使不是全球分布,也具有非常广泛的分布。然而,这并没有反映在潜在的基因同一性上。相反,这些生物的广泛分布是通过存在密切相关但离散的生态型来实现的,这些生态型表现出生态位适应性。密切相关的生态型表现出特定的营养或能量产生机制,并适应不同的物理参数,包括温度、盐度和静水压力。此外,诸如选择性捕食和病毒损失等生物现象有助于生态型的成功或失败,使得一些生态型能够在特定的海洋区域有效竞争,而在其他区域则不能。洋流和界定微生物扩散和迁移的水体质量的水动力特异性增加了另一层复杂性。这些在强度和方向上随时间和空间变化,使得大型生物地理区域的定义存在问题。旨在理解所有这些因素如何塑造海洋微生物生命的确定性理论只能通过分析微生物特征来推进,而不是纯粹的系统发育评估。基于特征的方法寻求对观察到的时间和空间模式的机理解释。本综述将介绍一些最丰富的海洋分类群在系统发育和基于特征的生物地理分析方面的最新成功进展。