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通过系谱分析评估巴西英国牛品种的起源和遗传多样性。

Origins and genetic diversity of British cattle breeds in Brazil assessed by pedigree analyses.

作者信息

Piccoli M L, Braccini Neto J, Brito F V, Campos L T, Bértoli C D, Campos G S, Cobuci J A, McManus C M, Barcellos J O J, Gama L T

机构信息

Departamento de Zootecnia, Universidade Federal do Rio Grande do Sul, RS.

出版信息

J Anim Sci. 2014 May;92(5):1920-30. doi: 10.2527/jas.2013-7283. Epub 2014 Mar 26.

Abstract

Pedigree information available for Angus (ANG), Devon (DEV), Hereford (HER), and Shorthorn (SHO) cattle in Brazil was analyzed to appraise the genetic diversity and population structure of these breeds. Pedigree records collected from the beginning of the 20th century until 2010 were used in the analyses. Over time, the number of herdbook registrations declined in HER after a peak in the 1970s, remained low in DEV and SHO, and increased steadily in ANG since the 1990s, such that it the latter is now the leading British cattle breed in Brazil. The average number of offspring registered per sire ranged from about 12 (SHO) to 20 (DEV) and the mean generation interval ranged from about 6.0 (HER and SHO) to 6.4 (ANG) years. In the reference population (calves born in 2009 and 2010, plus those born in 2008 for SHO) the mean equivalent number of generations known ranged from about 7 (SHO) to 9 (HER). In the 4 breeds studied, nearly all animals born over the last few years are inbred, even though the mean level of inbreeding in the reference population is below 4% in all breeds. The rate of inbreeding per generation, computed from the individual increase in inbreeding, ranged from about 0.2 (ANG) to 0.5% (DEV), with a corresponding effective population size of 245 and 92, respectively, which is above the recommended minimum critical threshold. The number of founders/ancestors contributing with 50% of the reference population gene pool was 211/26 for ANG, 41/14 for DEV, 164/25 for HER, and 79/10 for SHO, with effective number of founders/ancestors/founder genomes of 470/68/36, 89/33/16, 289/59/30, and 200/28/18 for ANG, DEV, HER, and SHO, respectively. The genetic contribution of different countries to the gene pool of each breed indicated that, throughout the period studied, DEV genes originated predominantly from the United Kingdom, while for the other breeds there was a changing pattern over time. Until the 1970s Argentina was the major supplier of ANG, while HER and SHO genes were mostly from Uruguay, but since then the United States took the leading role as supplier of ANG, HER, and SHO genes to Brazil. Our results reveal a mild increase in inbreeding in all breeds studied, with effective population size estimates indicating that reasonable levels of genetic diversity have been maintained in all 4 breeds. Continuous monitoring of inbreeding trends and of parameters derived from probability of gene origin should be ensured to warrant the long-term maintenance of genetic diversity.

摘要

对巴西安格斯(ANG)、德文(DEV)、赫里福德(HER)和短角(SHO)牛的系谱信息进行了分析,以评估这些品种的遗传多样性和种群结构。分析使用了从20世纪初到2010年收集的系谱记录。随着时间的推移,畜群登记数量在20世纪70年代达到峰值后在HER中下降,在DEV和SHO中保持较低水平,而自20世纪90年代以来ANG稳步增加,以至于后者现在是巴西领先的英国牛品种。每个种公牛登记的后代平均数量从约12头(SHO)到20头(DEV)不等,平均世代间隔从约6.0年(HER和SHO)到6.4年(ANG)不等。在参考群体(2009年和2010年出生的犊牛,加上SHO的2008年出生的犊牛)中,已知的平均等效世代数从约7代(SHO)到9代(HER)不等。在所研究的4个品种中,尽管参考群体中的平均近亲繁殖水平在所有品种中均低于4%,但过去几年出生的几乎所有动物都是近亲繁殖的。根据近亲繁殖的个体增加计算得出的每代近亲繁殖率从约0.2%(ANG)到0.5%(DEV)不等,相应的有效种群大小分别为245和92,高于建议的最低临界阈值。对参考群体基因库贡献50%的奠基者/祖先数量,ANG为211/26,DEV为41/14,HER为164/25,SHO为79/10,ANG、DEV、HER和SHO的有效奠基者/祖先/奠基者基因组数量分别为470/68/36、89/33/16、289/59/30和200/28/18。不同国家对每个品种基因库的遗传贡献表明,在整个研究期间,DEV基因主要起源于英国,而其他品种的基因随时间呈现出变化的模式。直到20世纪70年代,阿根廷是ANG的主要供应国,而HER和SHO基因大多来自乌拉圭,但从那时起,美国成为向巴西供应ANG、HER和SHO基因的主要国家。我们的结果显示,在所研究的所有品种中近亲繁殖略有增加,有效种群大小估计表明所有4个品种都保持了合理水平的遗传多样性。应确保持续监测近亲繁殖趋势以及源自基因起源概率的参数,以保证遗传多样性的长期维持。

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