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异烟肼的电子密度拓扑分析及静电性质:一项实验与理论研究。

Topological analysis of electron density and the electrostatic properties of isoniazid: an experimental and theoretical study.

作者信息

Rajalakshmi Gnanasekaran, Hathwar Venkatesha R, Kumaradhas Poomani

机构信息

Laboratory of Biocrystallography and Computational Molecular Biology, Department of Physics, Periyar University, Salem 636 011, India.

Solid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore 560 012, India.

出版信息

Acta Crystallogr B Struct Sci Cryst Eng Mater. 2014 Apr;70(Pt 2):331-41. doi: 10.1107/S2052520613033209. Epub 2014 Mar 17.

Abstract

Isoniazid (isonicotinohydrazide) is an important first-line antitubercular drug that targets the InhA enzyme which synthesizes the critical component of the mycobacterial cell wall. An experimental charge-density analysis of isoniazid has been performed to understand its structural and electronic properties in the solid state. A high-resolution single-crystal X-ray intensity data has been collected at 90 K. An aspherical multipole refinement was carried out to explore the topological and electrostatic properties of the isoniazid molecule. The experimental results were compared with the theoretical charge-density calculations performed using CRYSTAL09 with the B3LYP/6-31G** method. A topological analysis of the electron density reveals that the Laplacian of electron density of the N-N bond is significantly less negative, which indicates that the charges at the b.c.p. (bond-critical point) of the bond are least accumulated, and so the bond is considered to be weak. As expected, a strong negative electrostatic potential region is present in the vicinity of the O1, N1 and N3 atoms, which are the reactive locations of the molecule. The C-H···N, C-H···O and N-H···N types of intermolecular hydrogen-bonding interactions stabilize the crystal structure. The topological analysis of the electron density on hydrogen bonding shows the strength of intermolecular interactions.

摘要

异烟肼(异烟酸酰肼)是一种重要的一线抗结核药物,其作用靶点是合成分枝杆菌细胞壁关键成分的InhA酶。已对异烟肼进行了实验性电荷密度分析,以了解其固态下的结构和电子性质。在90 K下收集了高分辨率单晶X射线强度数据。进行了非球形多极精修,以探究异烟肼分子的拓扑和静电性质。将实验结果与使用CRYSTAL09和B3LYP/6 - 31G**方法进行的理论电荷密度计算结果进行了比较。电子密度的拓扑分析表明,N - N键的电子密度拉普拉斯算子的负值明显较小,这表明该键的键临界点处的电荷积累最少,因此该键被认为较弱。正如预期的那样,在O1、N1和N3原子附近存在强负静电势区域,这些原子是该分子的反应位点。C - H···N、C - H···O和N - H···N类型的分子间氢键相互作用稳定了晶体结构。氢键上电子密度的拓扑分析显示了分子间相互作用的强度。

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