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景观遗传学作为保护规划的工具:预测景观变化对基因流动的影响。

Landscape genetics as a tool for conservation planning: predicting the effects of landscape change on gene flow.

出版信息

Ecol Appl. 2014 Mar;24(2):327-39. doi: 10.1890/13-0442.1.

Abstract

For conservation managers, it is important to know whether landscape changes lead to increasing or decreasing gene flow. Although the discipline of landscape genetics assesses the influence of landscape elements on gene flow, no studies have yet used landscape-genetic models to predict gene flow resulting from landscape change. A species that has already been severely affected by landscape change is the large marsh grasshopper (Stethophyma grossum), which inhabits moist areas in fragmented agricultural landscapes in Switzerland. From transects drawn between all population pairs within maximum dispersal distance (< 3 km), we calculated several measures of landscape composition as well as some measures of habitat configuration. Additionally, a complete sampling of all populations in our study area allowed incorporating measures of population topology. These measures together with the landscape metrics formed the predictor variables in linear models with gene flow as response variable (F(ST) and mean pairwise assignment probability). With a modified leave-one-out cross-validation approach, we selected the model with the highest predictive accuracy. With this model, we predicted gene flow under several landscape-change scenarios, which simulated construction, rezoning or restoration projects, and the establishment of a new population. For some landscape-change scenarios, significant increase or decrease in gene flow was predicted, while for others little change was forecast. Furthermore, we found that the measures of population topology strongly increase model fit in landscape genetic analysis. This study demonstrates the use of predictive landscape-genetic models in conservation and landscape planning.

摘要

对于自然资源保护管理者来说,了解景观变化是增加还是减少基因流非常重要。尽管景观遗传学这一学科评估了景观要素对基因流的影响,但还没有研究利用景观遗传模型来预测景观变化所导致的基因流。一种已经受到景观变化严重影响的物种是大型沼泽蝗(Stethophyma grossum),它栖息在瑞士破碎化农业景观中的潮湿地区。在最大扩散距离(<3 公里)内,我们在所有种群对之间绘制了横断面,计算了一些景观组成的度量,以及一些栖息地配置的度量。此外,对我们研究区域内所有种群的全面采样,使我们能够纳入种群拓扑的度量。这些度量与景观指标一起作为线性模型的预测变量,以基因流作为响应变量(F(ST)和平均成对分配概率)。通过改进的留一法交叉验证方法,我们选择了预测精度最高的模型。利用该模型,我们预测了几种景观变化情景下的基因流,这些情景模拟了建设、重新分区或恢复项目,以及建立一个新的种群。对于一些景观变化情景,预测基因流会显著增加或减少,而对于其他情景,则预测变化很小。此外,我们发现种群拓扑的度量极大地提高了景观遗传分析中的模型拟合度。本研究展示了预测性景观遗传模型在保护和景观规划中的应用。

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