Suppr超能文献

视紫红质激活时诱导螺旋重排的分子内相互作用:通过半胱氨酸S-H伸缩振动探测的变视紫红质IIa中的光诱导结构变化。

Intramolecular interactions that induce helical rearrangement upon rhodopsin activation: light-induced structural changes in metarhodopsin IIa probed by cysteine S-H stretching vibrations.

作者信息

Yamazaki Yoichi, Nagata Tomoko, Terakita Akihisa, Kandori Hideki, Shichida Yoshinori, Imamoto Yasushi

机构信息

From the Department of Biophysics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan, the Graduate School of Materials Science, Nara Institute of Science and Technology, Nara, 630-0192, Japan.

From the Department of Biophysics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.

出版信息

J Biol Chem. 2014 May 16;289(20):13792-800. doi: 10.1074/jbc.M113.527606. Epub 2014 Apr 1.

Abstract

Rhodopsin undergoes rearrangements of its transmembrane helices after photon absorption to transfer a light signal to the G-protein transducin. To investigate the mechanism by which rhodopsin adopts the transducin-activating conformation, the local environmental changes in the transmembrane region were probed using the cysteine S-H group, whose stretching frequency is well isolated from the other protein vibrational modes. The S-H stretching modes of cysteine residues introduced into Helix III, which contains several key residues for the helical movements, and of native cysteine residues were measured by Fourier transform infrared spectroscopy. This method was applied to metarhodopsin IIa, a precursor of the transducin-activating state in which the intramolecular interactions are likely to produce a state ready for helical movements. No environmental change was observed near the ionic lock between Arg-135 in Helix III and Glu-247 in Helix VI that maintains the inactive conformation. Rather, the cysteine residues that showed environmental changes were located around the chromophore, Ala-164, His-211, and Phe-261. These findings imply that the hydrogen bond between Helix III and Helix V involving Glu-122 and His-211 and the hydrophobic packing between Helix III and Helix VI involving Gly-121, Leu-125, Phe-261, and Trp-265 are altered before the helical rearrangement leading toward the active conformation.

摘要

视紫红质在吸收光子后,其跨膜螺旋会发生重排,以将光信号传递给G蛋白转导素。为了研究视紫红质采用转导素激活构象的机制,利用半胱氨酸的S-H基团探测跨膜区域的局部环境变化,该基团的伸缩频率与其他蛋白质振动模式很好地分离。通过傅里叶变换红外光谱法测量引入到包含螺旋运动几个关键残基的螺旋III中的半胱氨酸残基以及天然半胱氨酸残基的S-H伸缩模式。该方法应用于变视紫红质IIa,它是转导素激活状态的前体,其中分子内相互作用可能产生一个为螺旋运动做好准备的状态。在维持非活性构象的螺旋III中的精氨酸-135和螺旋VI中的谷氨酸-247之间的离子锁附近未观察到环境变化。相反,显示环境变化的半胱氨酸残基位于发色团、丙氨酸-164、组氨酸-211和苯丙氨酸-261周围。这些发现表明,涉及谷氨酸-122和组氨酸-211的螺旋III和螺旋V之间的氢键以及涉及甘氨酸-121、亮氨酸-125、苯丙氨酸-261和色氨酸-265的螺旋III和螺旋VI之间的疏水堆积在向活性构象的螺旋重排之前发生了改变。

相似文献

2
Retinal dynamics during light activation of rhodopsin revealed by solid-state NMR spectroscopy.
Biochim Biophys Acta. 2010 Feb;1798(2):177-93. doi: 10.1016/j.bbamem.2009.08.013. Epub 2009 Aug 28.
3
Requirement of rigid-body motion of transmembrane helices for light activation of rhodopsin.
Science. 1996 Nov 1;274(5288):768-70. doi: 10.1126/science.274.5288.768.
4
The roles of transmembrane domain helix-III during rhodopsin photoactivation.
PLoS One. 2011 Feb 25;6(2):e17398. doi: 10.1371/journal.pone.0017398.
5
Transducin-dependent protonation of glutamic acid 134 in rhodopsin.
Biochemistry. 2000 Aug 29;39(34):10607-12. doi: 10.1021/bi000912d.
6
Mapping of the local environmental changes in proteins by cysteine scanning.
Biophysics (Nagoya-shi). 2014 Jan 16;10:1-7. doi: 10.2142/biophysics.10.1. eCollection 2014.
8
Conformational Differences among Metarhodopsin I, Metarhodopsin II, and Opsin Probed by Wide-Angle X-ray Scattering.
J Phys Chem B. 2019 Oct 31;123(43):9134-9142. doi: 10.1021/acs.jpcb.9b08311. Epub 2019 Oct 22.
10
Precision vs flexibility in GPCR signaling.
J Am Chem Soc. 2013 Aug 21;135(33):12305-12. doi: 10.1021/ja405133k. Epub 2013 Aug 9.

引用本文的文献

1
Deprotonation of retinal Schiff base and structural dynamics in the early photoreaction of primate blue cone visual pigment.
Biophys J. 2025 Jun 17;124(12):2070-2081. doi: 10.1016/j.bpj.2025.05.004. Epub 2025 May 7.
2
Early Proton Transfer Reaction in a Primate Blue-Sensitive Visual Pigment.
Biochemistry. 2022 Dec 6;61(23):2698-2708. doi: 10.1021/acs.biochem.2c00483. Epub 2022 Nov 18.

本文引用的文献

1
Mapping of the local environmental changes in proteins by cysteine scanning.
Biophysics (Nagoya-shi). 2014 Jan 16;10:1-7. doi: 10.2142/biophysics.10.1. eCollection 2014.
2
Efficiencies of activation of transducin by cone and rod visual pigments.
Biochemistry. 2013 Apr 30;52(17):3010-8. doi: 10.1021/bi3015967. Epub 2013 Apr 19.
3
Stabilized G protein binding site in the structure of constitutively active metarhodopsin-II.
Proc Natl Acad Sci U S A. 2012 Jan 3;109(1):119-24. doi: 10.1073/pnas.1114089108. Epub 2011 Dec 23.
4
Structural insights into agonist-induced activation of G-protein-coupled receptors.
Curr Opin Struct Biol. 2011 Aug;21(4):541-51. doi: 10.1016/j.sbi.2011.06.002. Epub 2011 Jun 30.
5
Crystal structure of metarhodopsin II.
Nature. 2011 Mar 31;471(7340):651-5. doi: 10.1038/nature09789. Epub 2011 Mar 9.
6
The structural basis of agonist-induced activation in constitutively active rhodopsin.
Nature. 2011 Mar 31;471(7340):656-60. doi: 10.1038/nature09795. Epub 2011 Mar 9.
7
Tracking G-protein-coupled receptor activation using genetically encoded infrared probes.
Nature. 2010 Apr 29;464(7293):1386-9. doi: 10.1038/nature08948. Epub 2010 Apr 11.
10
Two protonation switches control rhodopsin activation in membranes.
Proc Natl Acad Sci U S A. 2008 Nov 18;105(46):17795-800. doi: 10.1073/pnas.0804541105. Epub 2008 Nov 7.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验