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使用闭塞性气道疾病小鼠模型的生物信息学分析激活嗜酸性粒细胞CCR3信号传导和嗜酸性粒细胞趋化因子

Activation of eosinophil CCR3 signaling and eotaxin using a bioinformatics analysis of a mouse model of obliterative airway disease.

作者信息

Dosanjh Amrita

机构信息

The Department of Molecular and Experimental Medicine, The Scripps Research Institute , La Jolla, California.

出版信息

J Interferon Cytokine Res. 2014 Jul;34(7):543-6. doi: 10.1089/jir.2013.0100. Epub 2014 Apr 4.

Abstract

The role of eosinophils in the development and progression of chronic allograft rejection is recognized in multiple organ transplantation settings. The CCR3 signaling pathway is one of the key regulatory pathways in eosinophil migration to the engrafted tissue. Eotaxin is a ligand for CCR3 and reflects eosinophilic inflammation, which can lead to fibrosis. We hypothesized that the CCR3 pathway would be upregulated in obliterative airway disease (OAD) in an established model of chronic airway allograft rejection. The mouse gene microarray data from a heterotopic mouse model of OAD in the NIH Gene Expression Omnibus (GEO) repository were analyzed for differentially expressed eosinophil pathways, using the Partek Suite and Ingenuity Pathway Analysis. A P value of <0.005 was defined as significant for differential expression, and P value of <0.05 for pathways. Day 25 allografts were defined as chronic allograft rejection and day 4 as acute allograft rejection. The isografts and allografts at day 25 showed significant upregulation of the eosinophil CCR3 pathway (P=0.04), based on the analysis of 1,299 uniquely expressed genes. The isografts at day 4 were compared with those at day 25 based on the identification of 1,859 unique genes, and there was a trend toward the CCR3 pathway upregulation over time (P=0.06). CCR3 pathways were not upregulated during the progression of alloimmune rejection in the allografts at day 4 versus day 25 in comparison, based on the analysis of 1,603 genes. Eotaxin was upregulated in chronic allograft rejection by 2.5-fold. The eosinophil signaling pathway CCR3 and eotaxin were significantly expressed in chronic allograft rejection and our results imply a role in controlling early alloimmune damage in controls.

摘要

嗜酸性粒细胞在慢性移植排斥反应的发生和发展中的作用在多种器官移植中已得到认可。CCR3信号通路是嗜酸性粒细胞迁移至移植组织的关键调控通路之一。嗜酸性粒细胞趋化因子是CCR3的配体,反映嗜酸性粒细胞炎症,可导致纤维化。我们推测,在已建立的慢性气道移植排斥反应模型的闭塞性气道疾病(OAD)中,CCR3通路会被上调。使用Partek Suite和Ingenuity Pathway Analysis软件,对美国国立医学图书馆基因表达综合数据库(GEO)中OAD异位小鼠模型的小鼠基因芯片数据进行分析,以寻找差异表达的嗜酸性粒细胞通路。差异表达的P值<0.005被定义为具有统计学意义,通路的P值<0.05具有统计学意义。第25天的同种异体移植物被定义为慢性移植排斥反应,第4天的为急性移植排斥反应。基于对1299个独特表达基因的分析,第25天的同基因移植物和同种异体移植物显示嗜酸性粒细胞CCR3通路显著上调(P=0.04)。基于对1859个独特基因的鉴定,将第4天的同基因移植物与第25天的进行比较,结果显示CCR3通路随时间有上调趋势(P=0.06)。相比之下,基于对1603个基因的分析,在第4天与第25天的同种异体移植物的同种免疫排斥反应过程中,CCR3通路未上调。嗜酸性粒细胞趋化因子在慢性移植排斥反应中上调了2.5倍。嗜酸性粒细胞信号通路CCR3和嗜酸性粒细胞趋化因子在慢性移植排斥反应中显著表达,我们的结果表明它们在控制对照组早期同种免疫损伤中发挥作用。

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