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使用朴素贝叶斯分类器自动检测循环肿瘤细胞。

Automated detection of circulating tumor cells with naive Bayesian classifiers.

作者信息

Svensson Carl-Magnus, Krusekopf Solveigh, Lücke Jörg, Thilo Figge Marc

机构信息

Applied Systems Biology, Leibniz Institute for Natural Product Research and Infection Biology, Hans-Knöll-Institute (HKI), Jena, Germany; Frankfurt Institute for Advanced Studies (FIAS), Goethe-University Frankfurt, Frankfurt am Main, Germany.

出版信息

Cytometry A. 2014 Jun;85(6):501-11. doi: 10.1002/cyto.a.22471. Epub 2014 Apr 14.

DOI:10.1002/cyto.a.22471
PMID:24733633
Abstract

Personalized medicine is a modern healthcare approach where information on each person's unique clinical constitution is exploited to realize early disease intervention based on more informed medical decisions. The application of diagnostic tools in combination with measurement evaluation that can be performed in a reliable and automated fashion plays a key role in this context. As the progression of various cancer diseases and the effectiveness of their treatments are related to a varying number of tumor cells that circulate in blood, the determination of their extremely low numbers by liquid biopsy is a decisive prognostic marker. To detect and enumerate circulating tumor cells (CTCs) in a reliable and automated fashion, we apply methods from machine learning using a naive Bayesian classifier (NBC) based on a probabilistic generative mixture model. Cells are collected with a functionalized medical wire and are stained for fluorescence microscopy so that their color signature can be used for classification through the construction of Red-Green-Blue (RGB) color histograms. Exploiting the information on the fluorescence signature of CTCs by the NBC does not only allow going beyond previous approaches but also provides a method of unsupervised learning that is required for unlabeled training data. A quantitative comparison with a state-of-the-art support vector machine, which requires labeled data, demonstrates the competitiveness of the NBC method.

摘要

个性化医疗是一种现代医疗保健方法,它利用有关每个人独特临床体质的信息,以便在更明智的医疗决策基础上实现疾病的早期干预。在这种情况下,能够以可靠且自动化的方式进行测量评估的诊断工具的应用起着关键作用。由于各种癌症疾病的进展及其治疗效果与血液中循环的不同数量的肿瘤细胞相关,通过液体活检确定其极低数量是一个决定性的预后标志物。为了以可靠且自动化的方式检测和计数循环肿瘤细胞(CTC),我们应用基于概率生成混合模型的朴素贝叶斯分类器(NBC)的机器学习方法。使用功能化医用导线收集细胞,并对其进行荧光显微镜染色,以便通过构建红-绿-蓝(RGB)颜色直方图,利用其颜色特征进行分类。通过NBC利用CTC荧光特征的信息不仅超越了以往的方法,还提供了一种无监督学习方法,这对于未标记的训练数据是必需的。与需要标记数据的最先进支持向量机的定量比较证明了NBC方法的竞争力。

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