从人类皮肤刮屑中分离得到的缢缩赭色瓶霉UM 578的基因组序列草图
Draft Genome Sequence of Ochroconis constricta UM 578, Isolated from Human Skin Scraping.
作者信息
Chan Chai Ling, Yew Su Mei, Na Shiang Ling, Tan Yung-Chie, Lee Kok Wei, Yee Wai-Yan, Ngeow Yun Fong, Ng Kee Peng
机构信息
Department of Medical Microbiology, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia.
出版信息
Genome Announc. 2014 Apr 17;2(2):e00074-14. doi: 10.1128/genomeA.00074-14.
Abstract
Ochroconis constricta is a soilborne dematiaceous fungus that has never been reported to be associated with human infection. Here we report the first draft genome sequence of strain UM 578, isolated from human skin scraping. The genomic information revealed will contribute to a better understanding of this species.
摘要
缢缩赭色瓶霉是一种土壤传播的暗色真菌，从未有过与人类感染相关的报道。在此，我们报告了从人类皮肤刮屑中分离出的UM 578菌株的基因组草图序列。所揭示的基因组信息将有助于更好地了解该物种。
相似文献
1
Draft Genome Sequence of Ochroconis constricta UM 578, Isolated from Human Skin Scraping.
Genome Announc. 2014 Apr 17;2(2):e00074-14. doi: 10.1128/genomeA.00074-14.
2
Draft Genome Sequence of Dematiaceous Coelomycete Pyrenochaeta sp. Strain UM 256, Isolated from Skin Scraping.
Genome Announc. 2013 May 30;1(3):e00158-13. doi: 10.1128/genomeA.00158-13.
3
The genome of newly classified Ochroconis mirabilis: Insights into fungal adaptation to different living conditions.
BMC Genomics. 2016 Feb 3;17:91. doi: 10.1186/s12864-016-2409-8.
4
Draft Genome Sequence of Herpotrichiellaceae sp. UM 238 Isolated from Human Skin Scraping.
Genome Announc. 2013 Jan;1(1). doi: 10.1128/genomeA.00148-12. Epub 2013 Feb 14.
5
Genome Anatomy of Pyrenochaeta unguis-hominis UM 256, a Multidrug Resistant Strain Isolated from Skin Scraping.
PLoS One. 2016 Sep 14;11(9):e0162095. doi: 10.1371/journal.pone.0162095. eCollection 2016.
6
DemaDb: an integrated dematiaceous fungal genomes database.
Database (Oxford). 2016 Mar 15;2016. doi: 10.1093/database/baw008. Print 2016.
7
Molecular and Biological Differences Among Ochroconis Strains Collected from Indoor and Outdoor Environments.
Biocontrol Sci. 2018;23(4):187-198. doi: 10.4265/bio.23.187.
8
Dactylaria constricta: another dematiaceous fungus with neurotropic potential in mammals.
J Med Vet Mycol. 1987 Feb;25(1):55-8.
9
Morphologic and physiologic studies of three dematiaceous pathogens.
J Clin Microbiol. 1986 Jul;24(1):12-5. doi: 10.1128/jcm.24.1.12-15.1986.
10
Isolation and Characterization of an Atypical Metschnikowia sp. Strain from the Skin Scraping of a Dermatitis Patient.
PLoS One. 2016 Jun 9;11(6):e0156119. doi: 10.1371/journal.pone.0156119. eCollection 2016.
引用本文的文献
1
Genomic characterization and radiation tolerance of Naganishia kalamii sp. nov. and Cystobasidium onofrii sp. nov. from Mars 2020 mission assembly facilities.
IMA Fungus. 2023 Aug 11;14(1):15. doi: 10.1186/s43008-023-00119-4.
2
Genome-scale data resolve ancestral rock-inhabiting lifestyle in Dothideomycetes (Ascomycota).
IMA Fungus. 2019 Oct 30;10:19. doi: 10.1186/s43008-019-0018-2. eCollection 2019.
3
Genomic Analyses of Cladophialophora bantiana, a Major Cause of Cerebral Phaeohyphomycosis Provides Insight into Its Lifestyle, Virulence and Adaption in Host.
PLoS One. 2016 Aug 29;11(8):e0161008. doi: 10.1371/journal.pone.0161008. eCollection 2016.
4
DemaDb: an integrated dematiaceous fungal genomes database.
Database (Oxford). 2016 Mar 15;2016. doi: 10.1093/database/baw008. Print 2016.
5
The genome of newly classified Ochroconis mirabilis: Insights into fungal adaptation to different living conditions.
BMC Genomics. 2016 Feb 3;17:91. doi: 10.1186/s12864-016-2409-8.
本文引用的文献
1
Isolation and molecular identification of keratinophilic fungi from public parks soil in Shiraz, Iran.
Biomed Res Int. 2013;2013:619576. doi: 10.1155/2013/619576. Epub 2013 Jul 15.
2
Toward almost closed genomes with GapFiller.
Genome Biol. 2012 Jun 25;13(6):R56. doi: 10.1186/gb-2012-13-6-r56.
3
First report of subcutaneous phaeohyphomycosis caused by Ochroconis tshawytschae in an immunocompetent patient.
Med Mycol. 2012 Aug;50(6):637-40. doi: 10.3109/13693786.2011.653834. Epub 2012 Feb 6.
4
MEROPS: the database of proteolytic enzymes, their substrates and inhibitors.
Nucleic Acids Res. 2012 Jan;40(Database issue):D343-50. doi: 10.1093/nar/gkr987. Epub 2011 Nov 15.
5
Scaffolding pre-assembled contigs using SSPACE.
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
6
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training.
Genome Res. 2008 Dec;18(12):1979-90. doi: 10.1101/gr.081612.108. Epub 2008 Aug 29.
7
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
8
Disseminated phaeohyphomycosis due to Ochroconis gallopavum in the setting of advanced HIV infection.
Med Mycol. 2006 Dec;44(8):777-82. doi: 10.1080/13693780600900098.
9
AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome.
Genome Biol. 2006;7 Suppl 1(Suppl 1):S11.1-8. doi: 10.1186/gb-2006-7-s1-s11. Epub 2006 Aug 7.
10
Automated generation of heuristics for biological sequence comparison.
BMC Bioinformatics. 2005 Feb 15;6:31. doi: 10.1186/1471-2105-6-31.
Zotero 插件