从风化岩石表面分离的江宁迪茨氏菌菌株SBZ3-12的全基因组序列
Complete Genome Sequence of Dyella jiangningensis Strain SBZ3-12, Isolated from the Surfaces of Weathered Rock.
作者信息
Bao Yuanyuan, Kwok Amy Ho Yan, He Linyan, Jiang Jingwei, Huang Zhi, Leung Frederick Chi-Ching, Sheng Xiafang
机构信息
Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, China.
Bioinformatics Center, Nanjing Agricultural University, Nanjing, China.
出版信息
Genome Announc. 2014 May 15;2(3):e00416-14. doi: 10.1128/genomeA.00416-14.
Abstract
Dyella jiangningensis strain SBZ3-12 can weather biotite and release Al and Fe from biotite under nutrient-poor conditions. Here, we report the first complete genome sequence of D. jiangningensis strain SBZ3-12, which may facilitate a better understanding of the molecular mechanism behind mineral weathering.
摘要
江宁戴尔菌SBZ3-12菌株在营养匮乏条件下能够风化黑云母并从黑云母中释放铝和铁。在此，我们报道了江宁戴尔菌SBZ3-12菌株的首个完整基因组序列，这可能有助于更好地理解矿物风化背后的分子机制。
相似文献
1
Complete Genome Sequence of Dyella jiangningensis Strain SBZ3-12, Isolated from the Surfaces of Weathered Rock.
Genome Announc. 2014 May 15;2(3):e00416-14. doi: 10.1128/genomeA.00416-14.
2
Dyella jiangningensis sp. nov., a γ-proteobacterium isolated from the surface of potassium-bearing rock.
Int J Syst Evol Microbiol. 2013 Sep;63(Pt 9):3154-3157. doi: 10.1099/ijs.0.048470-0. Epub 2013 Feb 22.
3
Change in mineral weathering behaviors of a bacterium Chitinophaga jiangningensis JN53 under different nutrition conditions.
J Basic Microbiol. 2017 Apr;57(4):293-301. doi: 10.1002/jobm.201600652. Epub 2017 Jan 31.
4
Draft Genome Sequence of Rhizobium sp. H41, a Rock-Weathering Bacterium from a Weathered Rock Surface.
Genome Announc. 2014 Nov 6;2(6):e01127-14. doi: 10.1128/genomeA.01127-14.
5
Distinct biotite-weathering activities of Arthrobacter pascens F74 under different contact conditions.
J Basic Microbiol. 2020 Apr;60(4):362-371. doi: 10.1002/jobm.201900518. Epub 2019 Dec 16.
6
Draft Genome Sequence of Ensifer adhaerens M78, a Mineral-Weathering Bacterium Isolated from Soil.
Genome Announc. 2016 Sep 8;4(5):e00969-16. doi: 10.1128/genomeA.00969-16.
7
Frateuria defendens sp. nov., bacterium isolated from the yellows grapevine's disease vector Hyalesthes obsoletus.
Int J Syst Evol Microbiol. 2019 May;69(5):1281-1287. doi: 10.1099/ijsem.0.003305. Epub 2019 Feb 20.
8
The genome sequence of Dyella jiangningensis FCAV SCS01 from a lignocellulose-decomposing microbial consortium metagenome reveals potential for biotechnological applications.
Genet Mol Biol. 2018;41(2):507-513. doi: 10.1590/1678-4685-GMB-2017-0155. Epub 2018 May 14.
9
Interactions between Biotite and the Mineral-Weathering Bacterium F77.
Appl Environ Microbiol. 2020 Mar 18;86(7). doi: 10.1128/AEM.02568-19.
10
A Combination of Genomics, Transcriptomics, and Genetics Provides Insights into the Mineral Weathering Phenotype of Pseudomonas azotoformans F77.
Appl Environ Microbiol. 2021 Nov 24;87(24):e0155221. doi: 10.1128/AEM.01552-21. Epub 2021 Sep 29.
引用本文的文献
1
Bacteria-Killing Type IV Secretion Systems.
Front Microbiol. 2019 May 21;10:1078. doi: 10.3389/fmicb.2019.01078. eCollection 2019.
2
The genome sequence of Dyella jiangningensis FCAV SCS01 from a lignocellulose-decomposing microbial consortium metagenome reveals potential for biotechnological applications.
Genet Mol Biol. 2018;41(2):507-513. doi: 10.1590/1678-4685-GMB-2017-0155. Epub 2018 May 14.
3
Concentration-dependent responses of soil bacterial, fungal and nitrifying communities to silver nano and micron particles.
Environ Sci Pollut Res Int. 2018 Jul;25(19):18693-18704. doi: 10.1007/s11356-018-2087-y. Epub 2018 Apr 29.
4
Soil microbial community responses to contamination with silver, aluminium oxide and silicon dioxide nanoparticles.
Ecotoxicology. 2017 Apr;26(3):449-458. doi: 10.1007/s10646-017-1776-5. Epub 2017 Feb 14.
本文引用的文献
1
Siderophore-promoted dissolution of smectite by fluorescent Pseudomonas.
Environ Microbiol Rep. 2014 Oct;6(5):459-67. doi: 10.1111/1758-2229.12146.
2
Dyella jiangningensis sp. nov., a γ-proteobacterium isolated from the surface of potassium-bearing rock.
Int J Syst Evol Microbiol. 2013 Sep;63(Pt 9):3154-3157. doi: 10.1099/ijs.0.048470-0. Epub 2013 Feb 22.
3
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation.
OMICS. 2008 Jun;12(2):137-41. doi: 10.1089/omi.2008.0017.
4
Preparation of genomic DNA from bacteria.
Curr Protoc Mol Biol. 2001 Nov;Chapter 2:Unit 2.4. doi: 10.1002/0471142727.mb0204s56.
5
KAAS: an automatic genome annotation and pathway reconstruction server.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5. doi: 10.1093/nar/gkm321. Epub 2007 May 25.
6
14C-dead living biomass: evidence for microbial assimilation of ancient organic carbon during shale weathering.
Science. 2001 May 11;292(5519):1127-31. doi: 10.1126/science.1058332. Epub 2001 Mar 29.
7
The COG database: a tool for genome-scale analysis of protein functions and evolution.
Nucleic Acids Res. 2000 Jan 1;28(1):33-6. doi: 10.1093/nar/28.1.33.
8
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Nucleic Acids Res. 1997 Sep 1;25(17):3389-402. doi: 10.1093/nar/25.17.3389.
Zotero 插件